RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 RIMBP3Q9UFD9 1639 aa18.68■□□□□ 0.58
VCP-207ENST00000493886 SCAF11Q99590 1463 aaKnown RBP18.68■□□□□ 0.58
VCP-207ENST00000493886 NPATQ14207 1427 aa18.68■□□□□ 0.58
VCP-207ENST00000493886 GLI2P10070 1586 aa18.67■□□□□ 0.58
VCP-207ENST00000493886 MYOM2P54296 1465 aa18.67■□□□□ 0.58
VCP-207ENST00000493886 KIAA1210Q9ULL0 1709 aa18.67■□□□□ 0.58
VCP-207ENST00000493886 RICTORQ6R327 1708 aa18.67■□□□□ 0.58
VCP-207ENST00000493886 DIP2CQ9Y2E4 1556 aa18.67■□□□□ 0.58
VCP-207ENST00000493886 MYBBP1AQ9BQG0 1328 aaKnown RBP18.67■□□□□ 0.58
VCP-207ENST00000493886 PER1O15534 1290 aaPredicted RBP18.66■□□□□ 0.58
VCP-207ENST00000493886 MROH2AA6NES4 1674 aa18.66■□□□□ 0.58
VCP-207ENST00000493886 TMC1Q8TDI8 760 aa18.66■□□□□ 0.58
VCP-207ENST00000493886 ABCC3O15438 1527 aa18.66■□□□□ 0.58
VCP-207ENST00000493886 WASHC2CQ9Y4E1 1318 aa18.65■□□□□ 0.58
VCP-207ENST00000493886 IFT172Q9UG01 1749 aa18.64■□□□□ 0.58
VCP-207ENST00000493886 PNISRQ8TF01 805 aaKnown RBP18.64■□□□□ 0.57
VCP-207ENST00000493886 BRD4O60885 1362 aaPredicted RBP18.64■□□□□ 0.57
VCP-207ENST00000493886 CFAP65Q6ZU64 1925 aaKnown RBP18.64■□□□□ 0.57
VCP-207ENST00000493886 ADGRF5Q8IZF2 1346 aa18.64■□□□□ 0.57
VCP-207ENST00000493886 SENP3-EIF4A1A0A087X0R7 540 aa18.63■□□□□ 0.57
VCP-207ENST00000493886 CCDC136Q96JN2 1154 aa18.63■□□□□ 0.57
VCP-207ENST00000493886 ADGRB3O60242 1522 aa18.63■□□□□ 0.57
VCP-207ENST00000493886 PARD3Q8TEW0 1356 aa18.63■□□□□ 0.57
VCP-207ENST00000493886 PANK3Q9H999 370 aa18.62■□□□□ 0.57
VCP-207ENST00000493886 CFAP70Q5T0N1 1121 aa18.62■□□□□ 0.57
VCP-207ENST00000493886 EIF3AQ14152 1382 aaKnown RBP18.61■□□□□ 0.57
VCP-207ENST00000493886 CAMSAP1Q5T5Y3 1602 aa18.61■□□□□ 0.57
VCP-207ENST00000493886 CHGAP10645 457 aaKnown RBP18.6■□□□□ 0.57
VCP-207ENST00000493886 YEATS2Q9ULM3 1422 aa18.6■□□□□ 0.57
VCP-207ENST00000493886 NRXN1Q9ULB1 1477 aa18.6■□□□□ 0.57
VCP-207ENST00000493886 FAM69CQ0P6D2 419 aa18.6■□□□□ 0.57
VCP-207ENST00000493886 NOS1P29475 1434 aa18.58■□□□□ 0.57
VCP-207ENST00000493886 CDCA8Q53HL2 280 aa18.58■□□□□ 0.57
VCP-207ENST00000493886 DIP2BQ9P265 1576 aa18.58■□□□□ 0.56
VCP-207ENST00000493886 NLRP13Q86W25 1043 aa18.58■□□□□ 0.56
VCP-207ENST00000493886 LRPPRCP42704 1394 aaKnown RBP18.57■□□□□ 0.56
VCP-207ENST00000493886 PODXL2Q9NZ53 605 aa18.56■□□□□ 0.56
VCP-207ENST00000493886 SIGLEC1Q9BZZ2 1709 aa18.56■□□□□ 0.56
VCP-207ENST00000493886 CC2D1BQ5T0F9 858 aaKnown RBP18.56■□□□□ 0.56
VCP-207ENST00000493886 PPLO60437 1756 aa18.55■□□□□ 0.56
VCP-207ENST00000493886 SALL2Q9Y467 1007 aaPredicted RBP18.55■□□□□ 0.56
VCP-207ENST00000493886 ZC3H13Q5T200 1668 aaKnown RBP18.54■□□□□ 0.56
VCP-207ENST00000493886 ARHGAP31Q2M1Z3 1444 aa18.54■□□□□ 0.56
VCP-207ENST00000493886 SYNMO15061 1565 aa18.53■□□□□ 0.56
VCP-207ENST00000493886 ZMYM4Q5VZL5 1548 aa18.53■□□□□ 0.56
VCP-207ENST00000493886 RPGRIP1LQ68CZ1 1315 aa18.53■□□□□ 0.56
VCP-207ENST00000493886 PIK3C2BO00750 1634 aa18.52■□□□□ 0.55
VCP-207ENST00000493886 PIK3C2GO75747 1445 aa18.51■□□□□ 0.55
VCP-207ENST00000493886 SETBP1Q9Y6X0 1596 aa18.51■□□□□ 0.55
VCP-207ENST00000493886 TSPOAP1O95153 1857 aa18.51■□□□□ 0.55
VCP-207ENST00000493886 B4GALNT3Q6L9W6 998 aa18.5■□□□□ 0.55
VCP-207ENST00000493886 KDM5AP29375 1690 aaKnown RBP18.5■□□□□ 0.55
VCP-207ENST00000493886 KNSTRNQ9Y448 316 aa18.5■□□□□ 0.55
VCP-207ENST00000493886 SMG6Q86US8 1419 aaKnown RBP18.49■□□□□ 0.55
VCP-207ENST00000493886 C14orf93Q9H972 538 aaKnown RBP18.49■□□□□ 0.55
VCP-207ENST00000493886 MYOM1P52179 1685 aa18.49■□□□□ 0.55
VCP-207ENST00000493886 MYO3AQ8NEV4 1616 aa18.48■□□□□ 0.55
VCP-207ENST00000493886 ERVK-7P63135 1459 aa18.48■□□□□ 0.55
VCP-207ENST00000493886 MSH5O43196 834 aa18.47■□□□□ 0.55
VCP-207ENST00000493886 NUDCQ9Y266 331 aa18.46■□□□□ 0.55
VCP-207ENST00000493886 SBNO2Q9Y2G9 1366 aa18.46■□□□□ 0.55
VCP-207ENST00000493886 AMER1Q5JTC6 1135 aaPredicted RBP18.46■□□□□ 0.55
VCP-207ENST00000493886 ADGRB1O14514 1584 aa18.45■□□□□ 0.54
VCP-207ENST00000493886 IDI1Q13907 227 aa18.45■□□□□ 0.54
VCP-207ENST00000493886 CENPJQ9HC77 1338 aaPredicted RBP18.44■□□□□ 0.54
VCP-207ENST00000493886 SLC52A1Q9NWF4 448 aa18.44■□□□□ 0.54
VCP-207ENST00000493886 NEXMIFQ5QGS0 1516 aa18.44■□□□□ 0.54
VCP-207ENST00000493886 ERICH6BQ5W0A0 696 aa18.44■□□□□ 0.54
VCP-207ENST00000493886 PKNOX2Q96KN3 472 aa18.44■□□□□ 0.54
VCP-207ENST00000493886 ASXL1Q8IXJ9 1541 aa18.44■□□□□ 0.54
VCP-207ENST00000493886 VGFO15240 615 aaPredicted RBP18.43■□□□□ 0.54
VCP-207ENST00000493886 PPP4R2Q9NY27 417 aa18.43■□□□□ 0.54
VCP-207ENST00000493886 TRAK1Q9UPV9 953 aa18.43■□□□□ 0.54
VCP-207ENST00000493886 PREX1Q8TCU6 1659 aa18.43■□□□□ 0.54
VCP-207ENST00000493886 TMEM132EQ6IEE7 984 aa18.42■□□□□ 0.54
VCP-207ENST00000493886 NUTM2DQ5VT03 806 aaPredicted RBP18.42■□□□□ 0.54
VCP-207ENST00000493886 REREQ9P2R6 1566 aa18.41■□□□□ 0.54
VCP-207ENST00000493886 NPC1L1Q9UHC9 1359 aa18.41■□□□□ 0.54
VCP-207ENST00000493886 INSRP06213 1382 aa18.4■□□□□ 0.54
VCP-207ENST00000493886 PPP2R1AP30153 589 aa18.39■□□□□ 0.54
VCP-207ENST00000493886 AGLP35573 1532 aa18.39■□□□□ 0.53
VCP-207ENST00000493886 QRICH2Q9H0J4 1663 aa18.39■□□□□ 0.53
VCP-207ENST00000493886 ZFYVE9O95405 1425 aa18.37■□□□□ 0.53
VCP-207ENST00000493886 BLMP54132 1417 aaPredicted RBP18.37■□□□□ 0.53
VCP-207ENST00000493886 MYO5BQ9ULV0 1848 aa18.37■□□□□ 0.53
VCP-207ENST00000493886 TMEM131LA2VDJ0 1609 aa18.37■□□□□ 0.53
VCP-207ENST00000493886 FBXO31Q5XUX0 539 aaPredicted RBP18.36■□□□□ 0.53
VCP-207ENST00000493886 PPP6R1Q9UPN7 881 aa18.36■□□□□ 0.53
VCP-207ENST00000493886 KIF13AQ9H1H9 1805 aa18.35■□□□□ 0.53
VCP-207ENST00000493886 CARD14Q9BXL6 1004 aa18.34■□□□□ 0.53
VCP-207ENST00000493886 RNF123Q5XPI4 1314 aa18.34■□□□□ 0.53
VCP-207ENST00000493886 ARHGEF28Q8N1W1 1705 aaKnown RBP18.33■□□□□ 0.52
VCP-207ENST00000493886 PDE3BQ13370 1112 aa18.32■□□□□ 0.52
VCP-207ENST00000493886 CLTCQ00610 1675 aaKnown RBP18.31■□□□□ 0.52
VCP-207ENST00000493886 ADAMTS8Q9UP79 889 aa18.31■□□□□ 0.52
VCP-207ENST00000493886 ARHGEF40Q8TER5 1519 aa18.29■□□□□ 0.52
VCP-207ENST00000493886 WDR43Q15061 677 aaKnown RBP eCLIP18.29■□□□□ 0.52
VCP-207ENST00000493886 FANCIQ9NVI1 1328 aa18.28■□□□□ 0.52
VCP-207ENST00000493886 SLC12A5Q9H2X9 1139 aa18.28■□□□□ 0.52
VCP-207ENST00000493886 MLECQ14165 292 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms