RNA–Protein interactions for RNA: ENST00000490207.5

SMC4-222, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-222ENST00000490207 TRIM52Q96A61 297 aa29.71■■■□□ 2.35
SMC4-222ENST00000490207 PLEKHG1Q9ULL1 1385 aa29.71■■■□□ 2.35
SMC4-222ENST00000490207 PPP1R15AO75807 674 aaPredicted RBP29.7■■■□□ 2.35
SMC4-222ENST00000490207 XIRP1Q702N8 1843 aaKnown RBP29.69■■■□□ 2.34
SMC4-222ENST00000490207 NWD1Q149M9 1564 aa29.69■■■□□ 2.34
SMC4-222ENST00000490207 HDGFP51858 240 aaKnown RBP29.68■■■□□ 2.34
SMC4-222ENST00000490207 SLC26A8Q96RN1 970 aa29.67■■■□□ 2.34
SMC4-222ENST00000490207 KIF1BO60333 1816 aa29.66■■■□□ 2.34
SMC4-222ENST00000490207 BCANQ96GW7 911 aa29.66■■■□□ 2.34
SMC4-222ENST00000490207 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.65■■■□□ 2.34
SMC4-222ENST00000490207 ALKQ9UM73 1620 aa29.64■■■□□ 2.34
SMC4-222ENST00000490207 DIP2AQ14689 1571 aa29.64■■■□□ 2.33
SMC4-222ENST00000490207 TOM1O60784 492 aa29.63■■■□□ 2.33
SMC4-222ENST00000490207 SENP3Q9H4L4 574 aaPredicted RBP29.62■■■□□ 2.33
SMC4-222ENST00000490207 CHD2O14647 1828 aaKnown RBP29.61■■■□□ 2.33
SMC4-222ENST00000490207 NKTRP30414 1462 aaKnown RBP29.61■■■□□ 2.33
SMC4-222ENST00000490207 SLC4A1APQ9BWU0 796 aaKnown RBP29.61■■■□□ 2.33
SMC4-222ENST00000490207 KCNA6P17658 529 aa29.59■■■□□ 2.33
SMC4-222ENST00000490207 NUTM2DQ5VT03 806 aaPredicted RBP29.59■■■□□ 2.33
SMC4-222ENST00000490207 SCAF1Q9H7N4 1312 aaKnown RBP29.59■■■□□ 2.33
SMC4-222ENST00000490207 ADAMTS13Q76LX8 1427 aa29.56■■■□□ 2.32
SMC4-222ENST00000490207 PIP4K2BP78356 416 aa29.56■■■□□ 2.32
SMC4-222ENST00000490207 NEXMIFQ5QGS0 1516 aa29.55■■■□□ 2.32
SMC4-222ENST00000490207 NRXN3Q9Y4C0 1643 aa29.54■■■□□ 2.32
SMC4-222ENST00000490207 ZNF326Q5BKZ1 582 aaKnown RBP29.54■■■□□ 2.32
SMC4-222ENST00000490207 TMEM94Q12767 1356 aa29.52■■■□□ 2.32
SMC4-222ENST00000490207 SETBP1Q9Y6X0 1596 aa29.52■■■□□ 2.32
SMC4-222ENST00000490207 SETD5Q9C0A6 1442 aa29.52■■■□□ 2.32
SMC4-222ENST00000490207 TBX22Q9Y458 520 aa29.5■■■□□ 2.31
SMC4-222ENST00000490207 PROSER2Q86WR7 435 aaPredicted RBP29.48■■■□□ 2.31
SMC4-222ENST00000490207 PIK3R4Q99570 1358 aa29.47■■■□□ 2.31
SMC4-222ENST00000490207 FOXD1Q16676 465 aa29.45■■■□□ 2.31
SMC4-222ENST00000490207 MPHOSPH9Q99550 1183 aa29.44■■■□□ 2.3
SMC4-222ENST00000490207 PPLO60437 1756 aa29.44■■■□□ 2.3
SMC4-222ENST00000490207 ACIN1Q9UKV3 1341 aaKnown RBP29.44■■■□□ 2.3
SMC4-222ENST00000490207 HSPA1LP34931 641 aa29.42■■■□□ 2.3
SMC4-222ENST00000490207 RBM33Q96EV2 1170 aaKnown RBP29.42■■■□□ 2.3
SMC4-222ENST00000490207 XRN1Q8IZH2 1706 aaKnown RBP29.42■■■□□ 2.3
SMC4-222ENST00000490207 RAB3GAP2Q9H2M9 1393 aa29.41■■■□□ 2.3
SMC4-222ENST00000490207 CCDC144AA2RUR9 1427 aa29.4■■■□□ 2.3
SMC4-222ENST00000490207 PTPRUQ92729 1446 aa29.38■■■□□ 2.29
SMC4-222ENST00000490207 MSH6P52701 1360 aa29.38■■■□□ 2.29
SMC4-222ENST00000490207 SETD1AO15047 1707 aaKnown RBP29.36■■■□□ 2.29
SMC4-222ENST00000490207 IFT172Q9UG01 1749 aa29.34■■■□□ 2.29
SMC4-222ENST00000490207 NCOA3Q9Y6Q9 1424 aa29.34■■■□□ 2.29
SMC4-222ENST00000490207 ROBO1Q9Y6N7 1651 aa29.34■■■□□ 2.29
SMC4-222ENST00000490207 RPGRIP1LQ68CZ1 1315 aa29.33■■■□□ 2.29
SMC4-222ENST00000490207 DISP3Q9P2K9 1392 aa29.33■■■□□ 2.29
SMC4-222ENST00000490207 AMOTL2Q9Y2J4 779 aa29.31■■■□□ 2.28
SMC4-222ENST00000490207 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.31■■■□□ 2.28
SMC4-222ENST00000490207 METP08581 1390 aa29.3■■■□□ 2.28
SMC4-222ENST00000490207 VGFO15240 615 aaPredicted RBP29.3■■■□□ 2.28
SMC4-222ENST00000490207 FAM135BQ49AJ0 1406 aa29.29■■■□□ 2.28
SMC4-222ENST00000490207 SPATA31E1Q6ZUB1 1445 aa29.29■■■□□ 2.28
SMC4-222ENST00000490207 C14orf37Q86TY3 774 aa29.27■■■□□ 2.28
SMC4-222ENST00000490207 MED1Q15648 1581 aaPredicted RBP29.25■■■□□ 2.27
SMC4-222ENST00000490207 RGL3Q3MIN7 710 aa29.2■■■□□ 2.26
SMC4-222ENST00000490207 NALCNQ8IZF0 1738 aa29.2■■■□□ 2.26
SMC4-222ENST00000490207 ANKRD30BQ9BXX2 1392 aa29.19■■■□□ 2.26
SMC4-222ENST00000490207 SLAIN2Q9P270 581 aa29.18■■■□□ 2.26
SMC4-222ENST00000490207 DCCP43146 1447 aa29.18■■■□□ 2.26
SMC4-222ENST00000490207 C19orf44Q9H6X5 657 aa29.17■■■□□ 2.26
SMC4-222ENST00000490207 PTCH1Q13635 1447 aa29.17■■■□□ 2.26
SMC4-222ENST00000490207 PHLPP1O60346 1717 aa29.17■■■□□ 2.26
SMC4-222ENST00000490207 CADPS2Q86UW7 1296 aa29.16■■■□□ 2.26
SMC4-222ENST00000490207 PRAG1Q86YV5 1406 aa29.15■■■□□ 2.26
SMC4-222ENST00000490207 ATF3P18847 181 aa29.15■■■□□ 2.26
SMC4-222ENST00000490207 HRCP23327 699 aa29.15■■■□□ 2.26
SMC4-222ENST00000490207 ADGRF5Q8IZF2 1346 aa29.15■■■□□ 2.26
SMC4-222ENST00000490207 ADGRL3Q9HAR2 1447 aa29.14■■■□□ 2.26
SMC4-222ENST00000490207 PIK3C2GO75747 1445 aa29.11■■■□□ 2.25
SMC4-222ENST00000490207 MYOM2P54296 1465 aa29.1■■■□□ 2.25
SMC4-222ENST00000490207 ASXL1Q8IXJ9 1541 aa29.09■■■□□ 2.25
SMC4-222ENST00000490207 KNDC1Q76NI1 1749 aa29.08■■■□□ 2.25
SMC4-222ENST00000490207 ROBO2Q9HCK4 1378 aa29.08■■■□□ 2.25
SMC4-222ENST00000490207 LAMC1P11047 1609 aa29.08■■■□□ 2.25
SMC4-222ENST00000490207 COL16A1Q07092 1604 aaPredicted RBP29.08■■■□□ 2.25
SMC4-222ENST00000490207 AHDC1Q5TGY3 1603 aaPredicted RBP29.07■■■□□ 2.24
SMC4-222ENST00000490207 MST1RQ04912 1400 aa29.06■■■□□ 2.24
SMC4-222ENST00000490207 NRXN1Q9ULB1 1477 aa29.05■■■□□ 2.24
SMC4-222ENST00000490207 ILDR2Q71H61 639 aa29.03■■■□□ 2.24
SMC4-222ENST00000490207 NHSL1Q5SYE7 1610 aa29■■■□□ 2.23
SMC4-222ENST00000490207 TECPR2O15040 1411 aa29■■■□□ 2.23
SMC4-222ENST00000490207 LRPPRCP42704 1394 aaKnown RBP28.99■■■□□ 2.23
SMC4-222ENST00000490207 BRINP3Q76B58 766 aa28.98■■■□□ 2.23
SMC4-222ENST00000490207 PHF23Q9BUL5 403 aaPredicted RBP28.96■■■□□ 2.23
SMC4-222ENST00000490207 CDC42BPGQ6DT37 1551 aa28.96■■■□□ 2.23
SMC4-222ENST00000490207 JCADQ9P266 1359 aa28.95■■■□□ 2.22
SMC4-222ENST00000490207 YTHDC2Q9H6S0 1430 aaKnown RBP28.94■■■□□ 2.22
SMC4-222ENST00000490207 SHPRHQ149N8 1683 aa28.94■■■□□ 2.22
SMC4-222ENST00000490207 TMEM132EQ6IEE7 984 aa28.94■■■□□ 2.22
SMC4-222ENST00000490207 STK26Q9P289 416 aa28.94■■■□□ 2.22
SMC4-222ENST00000490207 C1orf167Q5SNV9 1468 aa28.92■■■□□ 2.22
SMC4-222ENST00000490207 ABCC11Q96J66 1382 aa28.92■■■□□ 2.22
SMC4-222ENST00000490207 C14orf93Q9H972 538 aaKnown RBP28.92■■■□□ 2.22
SMC4-222ENST00000490207 CFAP70Q5T0N1 1121 aa28.89■■■□□ 2.22
SMC4-222ENST00000490207 DHX57Q6P158 1386 aaKnown RBP28.87■■■□□ 2.21
SMC4-222ENST00000490207 PLEKHH1Q9ULM0 1364 aa28.86■■■□□ 2.21
SMC4-222ENST00000490207 WAPLQ7Z5K2 1190 aa28.85■■■□□ 2.21
SMC4-222ENST00000490207 DCAF11Q8TEB1 546 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms