RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 HIRIP3Q9BW71 556 aaPredicted RBP30.56■■■□□ 2.48
SMC4-221ENST00000489573 CARD11Q9BXL7 1154 aa30.56■■■□□ 2.48
SMC4-221ENST00000489573 MYO5BQ9ULV0 1848 aa30.55■■■□□ 2.48
SMC4-221ENST00000489573 LAMC1P11047 1609 aa30.55■■■□□ 2.48
SMC4-221ENST00000489573 ADGRF5Q8IZF2 1346 aa30.54■■■□□ 2.48
SMC4-221ENST00000489573 USP47Q96K76 1375 aa30.54■■■□□ 2.48
SMC4-221ENST00000489573 STAG3Q9UJ98 1225 aa30.54■■■□□ 2.48
SMC4-221ENST00000489573 CEBPAP49715 358 aaPredicted RBP30.53■■■□□ 2.48
SMC4-221ENST00000489573 RIMS1Q86UR5 1692 aaKnown RBP30.53■■■□□ 2.48
SMC4-221ENST00000489573 KIAA1210Q9ULL0 1709 aa30.52■■■□□ 2.48
SMC4-221ENST00000489573 A2ML1A8K2U0 1454 aa30.52■■■□□ 2.48
SMC4-221ENST00000489573 NBPF1Q3BBV0 1214 aa30.51■■■□□ 2.47
SMC4-221ENST00000489573 NLRP1Q9C000 1473 aa30.49■■■□□ 2.47
SMC4-221ENST00000489573 PIK3C2GO75747 1445 aa30.48■■■□□ 2.47
SMC4-221ENST00000489573 ZFYVE9O95405 1425 aa30.48■■■□□ 2.47
SMC4-221ENST00000489573 VGFO15240 615 aaPredicted RBP30.48■■■□□ 2.47
SMC4-221ENST00000489573 KDM5AP29375 1690 aaKnown RBP30.47■■■□□ 2.47
SMC4-221ENST00000489573 DIEXFQ68CQ4 756 aaKnown RBP30.46■■■□□ 2.47
SMC4-221ENST00000489573 PLPPR3Q6T4P5 718 aa30.42■■■□□ 2.46
SMC4-221ENST00000489573 CFAP70Q5T0N1 1121 aa30.41■■■□□ 2.46
SMC4-221ENST00000489573 UBR1Q8IWV7 1749 aa30.4■■■□□ 2.46
SMC4-221ENST00000489573 RIMS2Q9UQ26 1411 aa30.4■■■□□ 2.46
SMC4-221ENST00000489573 NUTM2DQ5VT03 806 aaPredicted RBP30.4■■■□□ 2.46
SMC4-221ENST00000489573 SETBP1Q9Y6X0 1596 aa30.37■■■□□ 2.45
SMC4-221ENST00000489573 C14orf93Q9H972 538 aaKnown RBP30.37■■■□□ 2.45
SMC4-221ENST00000489573 MYO3AQ8NEV4 1616 aa30.36■■■□□ 2.45
SMC4-221ENST00000489573 IQGAP1P46940 1657 aa30.36■■■□□ 2.45
SMC4-221ENST00000489573 SCAF11Q99590 1463 aaKnown RBP30.36■■■□□ 2.45
SMC4-221ENST00000489573 ST20-MTHFSA0A0A6YYL1 179 aa30.33■■■□□ 2.45
SMC4-221ENST00000489573 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.32■■■□□ 2.45
SMC4-221ENST00000489573 TMEM2Q9UHN6 1383 aa30.31■■■□□ 2.44
SMC4-221ENST00000489573 ADGRB1O14514 1584 aa30.3■■■□□ 2.44
SMC4-221ENST00000489573 WASHC2AQ641Q2 1341 aa30.29■■■□□ 2.44
SMC4-221ENST00000489573 HDGFP51858 240 aaKnown RBP30.29■■■□□ 2.44
SMC4-221ENST00000489573 POLR1AO95602 1720 aaPredicted RBP30.28■■■□□ 2.44
SMC4-221ENST00000489573 EIF3AQ14152 1382 aaKnown RBP30.27■■■□□ 2.44
SMC4-221ENST00000489573 PTPRMP28827 1452 aa30.27■■■□□ 2.44
SMC4-221ENST00000489573 CCDC7Q96M83 1385 aa30.27■■■□□ 2.44
SMC4-221ENST00000489573 C11orf95C9JLR9 678 aaPredicted RBP30.26■■■□□ 2.43
SMC4-221ENST00000489573 CEP170BQ9Y4F5 1589 aaPredicted RBP30.26■■■□□ 2.43
SMC4-221ENST00000489573 DDX10Q13206 875 aaKnown RBP30.24■■■□□ 2.43
SMC4-221ENST00000489573 SLIT1O75093 1534 aa30.23■■■□□ 2.43
SMC4-221ENST00000489573 KIF7Q2M1P5 1343 aa30.22■■■□□ 2.43
SMC4-221ENST00000489573 ARHGAP23Q9P227 1491 aa30.22■■■□□ 2.43
SMC4-221ENST00000489573 ALKQ9UM73 1620 aa30.22■■■□□ 2.43
SMC4-221ENST00000489573 ZNF142P52746 1687 aaPredicted RBP30.21■■■□□ 2.43
SMC4-221ENST00000489573 THEMISQ8N1K5 641 aaPredicted RBP30.2■■■□□ 2.43
SMC4-221ENST00000489573 ASXL1Q8IXJ9 1541 aa30.2■■■□□ 2.42
SMC4-221ENST00000489573 SETD1BQ9UPS6 1966 aaKnown RBP30.19■■■□□ 2.42
SMC4-221ENST00000489573 TMEM132EQ6IEE7 984 aa30.19■■■□□ 2.42
SMC4-221ENST00000489573 TESK2Q96S53 571 aa30.19■■■□□ 2.42
SMC4-221ENST00000489573 NRXN3Q9Y4C0 1643 aa30.17■■■□□ 2.42
SMC4-221ENST00000489573 SENP3Q9H4L4 574 aaPredicted RBP30.16■■■□□ 2.42
SMC4-221ENST00000489573 EID1Q9Y6B2 187 aa30.15■■■□□ 2.42
SMC4-221ENST00000489573 SETD1AO15047 1707 aaKnown RBP30.14■■■□□ 2.42
SMC4-221ENST00000489573 PLEKHG1Q9ULL1 1385 aa30.13■■■□□ 2.41
SMC4-221ENST00000489573 LTKP29376 864 aa30.12■■■□□ 2.41
SMC4-221ENST00000489573 TXNDC2Q86VQ3 553 aa30.12■■■□□ 2.41
SMC4-221ENST00000489573 TRAK1Q9UPV9 953 aa30.12■■■□□ 2.41
SMC4-221ENST00000489573 TMF1P82094 1093 aa30.11■■■□□ 2.41
SMC4-221ENST00000489573 YTHDC2Q9H6S0 1430 aaKnown RBP30.1■■■□□ 2.41
SMC4-221ENST00000489573 DISP3Q9P2K9 1392 aa30.09■■■□□ 2.41
SMC4-221ENST00000489573 ARHGEF28Q8N1W1 1705 aaKnown RBP30.08■■■□□ 2.41
SMC4-221ENST00000489573 CENPJQ9HC77 1338 aaPredicted RBP30.08■■■□□ 2.41
SMC4-221ENST00000489573 SBNO2Q9Y2G9 1366 aa30.07■■■□□ 2.4
SMC4-221ENST00000489573 BCANQ96GW7 911 aa30.07■■■□□ 2.4
SMC4-221ENST00000489573 POLR3GLQ9BT43 218 aa30.07■■■□□ 2.4
SMC4-221ENST00000489573 SLC24A1O60721 1099 aa30.06■■■□□ 2.4
SMC4-221ENST00000489573 ADAMTS13Q76LX8 1427 aa30.05■■■□□ 2.4
SMC4-221ENST00000489573 LRPPRCP42704 1394 aaKnown RBP30.03■■■□□ 2.4
SMC4-221ENST00000489573 QRICH2Q9H0J4 1663 aa30.03■■■□□ 2.4
SMC4-221ENST00000489573 STK26Q9P289 416 aa30.03■■■□□ 2.4
SMC4-221ENST00000489573 MIER1Q8N108 512 aa30.01■■■□□ 2.39
SMC4-221ENST00000489573 METP08581 1390 aa30■■■□□ 2.39
SMC4-221ENST00000489573 DLC1Q96QB1 1528 aa30■■■□□ 2.39
SMC4-221ENST00000489573 MED14O60244 1454 aa30■■■□□ 2.39
SMC4-221ENST00000489573 CDCA8Q53HL2 280 aa29.99■■■□□ 2.39
SMC4-221ENST00000489573 DIP2AQ14689 1571 aa29.97■■■□□ 2.39
SMC4-221ENST00000489573 ABCC11Q96J66 1382 aa29.97■■■□□ 2.39
SMC4-221ENST00000489573 ANKLE2Q86XL3 938 aa29.96■■■□□ 2.39
SMC4-221ENST00000489573 KNDC1Q76NI1 1749 aa29.94■■■□□ 2.38
SMC4-221ENST00000489573 TECPR2O15040 1411 aa29.93■■■□□ 2.38
SMC4-221ENST00000489573 PRAM1Q96QH2 718 aa29.92■■■□□ 2.38
SMC4-221ENST00000489573 TBX22Q9Y458 520 aa29.92■■■□□ 2.38
SMC4-221ENST00000489573 SLC26A8Q96RN1 970 aa29.9■■■□□ 2.38
SMC4-221ENST00000489573 POGKQ9P215 609 aa29.9■■■□□ 2.38
SMC4-221ENST00000489573 CPS1P31327 1500 aa29.89■■■□□ 2.38
SMC4-221ENST00000489573 ANP32CO43423 234 aa29.89■■■□□ 2.38
SMC4-221ENST00000489573 SAFB2Q14151 953 aaKnown RBP eCLIP29.86■■■□□ 2.37
SMC4-221ENST00000489573 FAM135BQ49AJ0 1406 aa29.86■■■□□ 2.37
SMC4-221ENST00000489573 SIRT1Q96EB6 747 aa29.86■■■□□ 2.37
SMC4-221ENST00000489573 TULP4Q9NRJ4 1543 aa29.85■■■□□ 2.37
SMC4-221ENST00000489573 EVC2Q86UK5 1308 aa29.84■■■□□ 2.37
SMC4-221ENST00000489573 PTPRUQ92729 1446 aa29.83■■■□□ 2.37
SMC4-221ENST00000489573 NPHP4O75161 1426 aaPredicted RBP29.82■■■□□ 2.36
SMC4-221ENST00000489573 PIK3R4Q99570 1358 aa29.82■■■□□ 2.36
SMC4-221ENST00000489573 PLEKHH1Q9ULM0 1364 aa29.82■■■□□ 2.36
SMC4-221ENST00000489573 MYOM1P52179 1685 aa29.81■■■□□ 2.36
SMC4-221ENST00000489573 WAPLQ7Z5K2 1190 aa29.8■■■□□ 2.36
SMC4-221ENST00000489573 PUS7Q96PZ0 661 aaKnown RBP29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms