RNA–Protein interactions for RNA: ENST00000488594.5

GGPS1-206, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGPS1, Length 1,396 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-206ENST00000488594 HDGFP51858 240 aaKnown RBP29.53■■■□□ 2.32
GGPS1-206ENST00000488594 NWD1Q149M9 1564 aa29.53■■■□□ 2.32
GGPS1-206ENST00000488594 RGS17Q9UGC6 210 aaPredicted RBP29.52■■■□□ 2.32
GGPS1-206ENST00000488594 ZFYVE9O95405 1425 aa29.49■■■□□ 2.31
GGPS1-206ENST00000488594 MSH6P52701 1360 aa29.49■■■□□ 2.31
GGPS1-206ENST00000488594 PLEKHG1Q9ULL1 1385 aa29.49■■■□□ 2.31
GGPS1-206ENST00000488594 RBM33Q96EV2 1170 aaKnown RBP29.49■■■□□ 2.31
GGPS1-206ENST00000488594 PPP1R15AO75807 674 aaPredicted RBP29.47■■■□□ 2.31
GGPS1-206ENST00000488594 ROBO1Q9Y6N7 1651 aa29.47■■■□□ 2.31
GGPS1-206ENST00000488594 RIMS2Q9UQ26 1411 aa29.44■■■□□ 2.3
GGPS1-206ENST00000488594 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.42■■■□□ 2.3
GGPS1-206ENST00000488594 SLAIN2Q9P270 581 aa29.42■■■□□ 2.3
GGPS1-206ENST00000488594 TMEM131LA2VDJ0 1609 aa29.41■■■□□ 2.3
GGPS1-206ENST00000488594 TBX22Q9Y458 520 aa29.4■■■□□ 2.3
GGPS1-206ENST00000488594 UNC13BO14795 1591 aa29.4■■■□□ 2.3
GGPS1-206ENST00000488594 GCC2Q8IWJ2 1684 aa29.39■■■□□ 2.3
GGPS1-206ENST00000488594 NCOA3Q9Y6Q9 1424 aa29.39■■■□□ 2.29
GGPS1-206ENST00000488594 ROCK1Q13464 1354 aa29.38■■■□□ 2.29
GGPS1-206ENST00000488594 CHGAP10645 457 aaKnown RBP29.35■■■□□ 2.29
GGPS1-206ENST00000488594 CHD2O14647 1828 aaKnown RBP29.35■■■□□ 2.29
GGPS1-206ENST00000488594 MYO5BQ9ULV0 1848 aa29.34■■■□□ 2.29
GGPS1-206ENST00000488594 POTEAQ6S8J7 498 aa29.33■■■□□ 2.29
GGPS1-206ENST00000488594 JCADQ9P266 1359 aa29.33■■■□□ 2.29
GGPS1-206ENST00000488594 PIK3R4Q99570 1358 aa29.32■■■□□ 2.28
GGPS1-206ENST00000488594 DIP2AQ14689 1571 aa29.3■■■□□ 2.28
GGPS1-206ENST00000488594 ADAMTS13Q76LX8 1427 aa29.3■■■□□ 2.28
GGPS1-206ENST00000488594 PHLPP1O60346 1717 aa29.29■■■□□ 2.28
GGPS1-206ENST00000488594 C14orf37Q86TY3 774 aa29.29■■■□□ 2.28
GGPS1-206ENST00000488594 E9PCH4 1651 aa29.29■■■□□ 2.28
GGPS1-206ENST00000488594 IQGAP3Q86VI3 1631 aa29.28■■■□□ 2.28
GGPS1-206ENST00000488594 CADPS2Q86UW7 1296 aa29.26■■■□□ 2.28
GGPS1-206ENST00000488594 C19orf44Q9H6X5 657 aa29.26■■■□□ 2.27
GGPS1-206ENST00000488594 NUP155O75694 1391 aa29.25■■■□□ 2.27
GGPS1-206ENST00000488594 NUTM2DQ5VT03 806 aaPredicted RBP29.25■■■□□ 2.27
GGPS1-206ENST00000488594 ATF3P18847 181 aa29.23■■■□□ 2.27
GGPS1-206ENST00000488594 COL16A1Q07092 1604 aaPredicted RBP29.21■■■□□ 2.27
GGPS1-206ENST00000488594 SPATA31A6Q5VVP1 1343 aa29.2■■■□□ 2.27
GGPS1-206ENST00000488594 TRPM2O94759 1503 aa29.2■■■□□ 2.27
GGPS1-206ENST00000488594 AMOTL2Q9Y2J4 779 aa29.18■■■□□ 2.26
GGPS1-206ENST00000488594 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.16■■■□□ 2.26
GGPS1-206ENST00000488594 AHDC1Q5TGY3 1603 aaPredicted RBP29.15■■■□□ 2.26
GGPS1-206ENST00000488594 ITGAEP38570 1179 aa29.14■■■□□ 2.26
GGPS1-206ENST00000488594 DCCP43146 1447 aa29.12■■■□□ 2.25
GGPS1-206ENST00000488594 PTPRUQ92729 1446 aa29.12■■■□□ 2.25
GGPS1-206ENST00000488594 MEX3CQ5U5Q3 659 aaKnown RBP29.11■■■□□ 2.25
GGPS1-206ENST00000488594 ZNF772Q68DY9 489 aaPredicted RBP29.1■■■□□ 2.25
GGPS1-206ENST00000488594 LRP6O75581 1613 aa29.09■■■□□ 2.25
GGPS1-206ENST00000488594 BRINP3Q76B58 766 aa29.09■■■□□ 2.25
GGPS1-206ENST00000488594 SETBP1Q9Y6X0 1596 aa29.09■■■□□ 2.25
GGPS1-206ENST00000488594 ZNF326Q5BKZ1 582 aaKnown RBP29.06■■■□□ 2.24
GGPS1-206ENST00000488594 SHPRHQ149N8 1683 aa29.06■■■□□ 2.24
GGPS1-206ENST00000488594 SPHKAPQ2M3C7 1700 aa29.04■■■□□ 2.24
GGPS1-206ENST00000488594 XRN1Q8IZH2 1706 aaKnown RBP29.04■■■□□ 2.24
GGPS1-206ENST00000488594 NRXN3Q9Y4C0 1643 aa29.04■■■□□ 2.24
GGPS1-206ENST00000488594 ASXL1Q8IXJ9 1541 aa29■■■□□ 2.23
GGPS1-206ENST00000488594 METP08581 1390 aa29■■■□□ 2.23
GGPS1-206ENST00000488594 SETD1AO15047 1707 aaKnown RBP28.99■■■□□ 2.23
GGPS1-206ENST00000488594 MST1RQ04912 1400 aa28.99■■■□□ 2.23
GGPS1-206ENST00000488594 SETD5Q9C0A6 1442 aa28.97■■■□□ 2.23
GGPS1-206ENST00000488594 ADGRL3Q9HAR2 1447 aa28.95■■■□□ 2.22
GGPS1-206ENST00000488594 NUTM2BA6NNL0 878 aaPredicted RBP28.94■■■□□ 2.22
GGPS1-206ENST00000488594 NUTM2EB1AL46 878 aaPredicted RBP28.94■■■□□ 2.22
GGPS1-206ENST00000488594 PPARGC1BQ86YN6 1023 aaKnown RBP28.94■■■□□ 2.22
GGPS1-206ENST00000488594 NUTM2AQ8IVF1 878 aaPredicted RBP28.94■■■□□ 2.22
GGPS1-206ENST00000488594 LRRC59Q96AG4 307 aaKnown RBP28.94■■■□□ 2.22
GGPS1-206ENST00000488594 RXRBP28702 533 aa28.93■■■□□ 2.22
GGPS1-206ENST00000488594 NEXMIFQ5QGS0 1516 aa28.93■■■□□ 2.22
GGPS1-206ENST00000488594 TRIM52Q96A61 297 aa28.92■■■□□ 2.22
GGPS1-206ENST00000488594 CLTCL1P53675 1640 aa28.91■■■□□ 2.22
GGPS1-206ENST00000488594 NHSL1Q5SYE7 1610 aa28.9■■■□□ 2.22
GGPS1-206ENST00000488594 CDK12Q9NYV4 1490 aaPredicted RBP28.88■■■□□ 2.21
GGPS1-206ENST00000488594 UPF1Q92900 1129 aaKnown RBP eCLIP28.88■■■□□ 2.21
GGPS1-206ENST00000488594 RRBP1Q9P2E9 1410 aaKnown RBP28.87■■■□□ 2.21
GGPS1-206ENST00000488594 NAIPQ13075 1403 aa28.86■■■□□ 2.21
GGPS1-206ENST00000488594 VGFO15240 615 aaPredicted RBP28.86■■■□□ 2.21
GGPS1-206ENST00000488594 AFF2P51816 1311 aa28.86■■■□□ 2.21
GGPS1-206ENST00000488594 PTCH1Q13635 1447 aa28.84■■■□□ 2.21
GGPS1-206ENST00000488594 PNPLA6Q8IY17 1366 aa28.82■■■□□ 2.2
GGPS1-206ENST00000488594 KIF1BO60333 1816 aa28.82■■■□□ 2.2
GGPS1-206ENST00000488594 NALCNQ8IZF0 1738 aa28.82■■■□□ 2.2
GGPS1-206ENST00000488594 RPGRIP1LQ68CZ1 1315 aa28.8■■■□□ 2.2
GGPS1-206ENST00000488594 DDX17Q92841 729 aaKnown RBP28.8■■■□□ 2.2
GGPS1-206ENST00000488594 C1orf167Q5SNV9 1468 aa28.8■■■□□ 2.2
GGPS1-206ENST00000488594 C8orf37Q96NL8 207 aa28.78■■■□□ 2.2
GGPS1-206ENST00000488594 PRAG1Q86YV5 1406 aa28.78■■■□□ 2.2
GGPS1-206ENST00000488594 ROBO2Q9HCK4 1378 aa28.76■■■□□ 2.19
GGPS1-206ENST00000488594 HFM1A2PYH4 1435 aa28.76■■■□□ 2.19
GGPS1-206ENST00000488594 RBM6P78332 1123 aaKnown RBP28.74■■■□□ 2.19
GGPS1-206ENST00000488594 QTRT2Q9H974 415 aaKnown RBP28.74■■■□□ 2.19
GGPS1-206ENST00000488594 LAMC1P11047 1609 aa28.73■■■□□ 2.19
GGPS1-206ENST00000488594 SLC4A1APQ9BWU0 796 aaKnown RBP28.73■■■□□ 2.19
GGPS1-206ENST00000488594 SOS2Q07890 1332 aaPredicted RBP28.72■■■□□ 2.19
GGPS1-206ENST00000488594 NGLY1Q96IV0 654 aa28.7■■■□□ 2.18
GGPS1-206ENST00000488594 ORAI2Q96SN7 254 aa28.7■■■□□ 2.18
GGPS1-206ENST00000488594 RGS12O14924 1447 aa28.68■■■□□ 2.18
GGPS1-206ENST00000488594 ADAMTS2O95450 1211 aa28.68■■■□□ 2.18
GGPS1-206ENST00000488594 PPLO60437 1756 aa28.62■■■□□ 2.17
GGPS1-206ENST00000488594 USP21Q9UK80 565 aa28.61■■■□□ 2.17
GGPS1-206ENST00000488594 NPHP3Q7Z494 1330 aa28.6■■■□□ 2.17
GGPS1-206ENST00000488594 CDC42BPGQ6DT37 1551 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms