RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 SLC52A1Q9NWF4 448 aa25.25■■□□□ 1.63
DDX56-210ENST00000479440 RPRD2Q5VT52 1461 aaKnown RBP25.25■■□□□ 1.63
DDX56-210ENST00000479440 APLP2Q06481 763 aa25.23■■□□□ 1.63
DDX56-210ENST00000479440 SETD1AO15047 1707 aaKnown RBP25.23■■□□□ 1.63
DDX56-210ENST00000479440 PLEKHG1Q9ULL1 1385 aa25.22■■□□□ 1.63
DDX56-210ENST00000479440 ADGRL2O95490 1459 aa25.21■■□□□ 1.63
DDX56-210ENST00000479440 ZFYVE9O95405 1425 aa25.2■■□□□ 1.63
DDX56-210ENST00000479440 SLAIN2Q9P270 581 aa25.2■■□□□ 1.62
DDX56-210ENST00000479440 CHIC2Q9UKJ5 165 aa25.2■■□□□ 1.62
DDX56-210ENST00000479440 COL16A1Q07092 1604 aaPredicted RBP25.19■■□□□ 1.62
DDX56-210ENST00000479440 GCC2Q8IWJ2 1684 aa25.18■■□□□ 1.62
DDX56-210ENST00000479440 PPP1R15AO75807 674 aaPredicted RBP25.18■■□□□ 1.62
DDX56-210ENST00000479440 NCOA3Q9Y6Q9 1424 aa25.18■■□□□ 1.62
DDX56-210ENST00000479440 CHD2O14647 1828 aaKnown RBP25.17■■□□□ 1.62
DDX56-210ENST00000479440 RIMS2Q9UQ26 1411 aa25.17■■□□□ 1.62
DDX56-210ENST00000479440 LOC105371045A0A1W2PR82 267 aa25.16■■□□□ 1.62
DDX56-210ENST00000479440 HDGFP51858 240 aaKnown RBP25.16■■□□□ 1.62
DDX56-210ENST00000479440 DIP2AQ14689 1571 aa25.14■■□□□ 1.61
DDX56-210ENST00000479440 SPATA31A6Q5VVP1 1343 aa25.13■■□□□ 1.61
DDX56-210ENST00000479440 TMEM131LA2VDJ0 1609 aa25.13■■□□□ 1.61
DDX56-210ENST00000479440 ANKRD50Q9ULJ7 1429 aa25.12■■□□□ 1.61
DDX56-210ENST00000479440 MYO5BQ9ULV0 1848 aa25.11■■□□□ 1.61
DDX56-210ENST00000479440 LRP6O75581 1613 aa25.11■■□□□ 1.61
DDX56-210ENST00000479440 AHDC1Q5TGY3 1603 aaPredicted RBP25.11■■□□□ 1.61
DDX56-210ENST00000479440 MEX3CQ5U5Q3 659 aaKnown RBP25.1■■□□□ 1.61
DDX56-210ENST00000479440 C14orf37Q86TY3 774 aa25.09■■□□□ 1.61
DDX56-210ENST00000479440 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.09■■□□□ 1.61
DDX56-210ENST00000479440 SHPRHQ149N8 1683 aa25.09■■□□□ 1.61
DDX56-210ENST00000479440 ZNF772Q68DY9 489 aaPredicted RBP25.08■■□□□ 1.61
DDX56-210ENST00000479440 TBX22Q9Y458 520 aa25.08■■□□□ 1.61
DDX56-210ENST00000479440 CADPS2Q86UW7 1296 aa25.07■■□□□ 1.6
DDX56-210ENST00000479440 PIK3R4Q99570 1358 aa25.06■■□□□ 1.6
DDX56-210ENST00000479440 UNC13BO14795 1591 aa25.05■■□□□ 1.6
DDX56-210ENST00000479440 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.05■■□□□ 1.6
DDX56-210ENST00000479440 ADAMTS13Q76LX8 1427 aa25.03■■□□□ 1.6
DDX56-210ENST00000479440 TRPM2O94759 1503 aa25.03■■□□□ 1.6
DDX56-210ENST00000479440 ATF3P18847 181 aa25.02■■□□□ 1.6
DDX56-210ENST00000479440 CHGAP10645 457 aaKnown RBP25.01■■□□□ 1.59
DDX56-210ENST00000479440 C19orf44Q9H6X5 657 aa25.01■■□□□ 1.59
DDX56-210ENST00000479440 FAM50AQ14320 339 aaKnown RBP25■■□□□ 1.59
DDX56-210ENST00000479440 E9PCH4 1651 aa24.98■■□□□ 1.59
DDX56-210ENST00000479440 DCCP43146 1447 aa24.98■■□□□ 1.59
DDX56-210ENST00000479440 TRIM52Q96A61 297 aa24.98■■□□□ 1.59
DDX56-210ENST00000479440 UPF1Q92900 1129 aaKnown RBP eCLIP24.97■■□□□ 1.59
DDX56-210ENST00000479440 CDK12Q9NYV4 1490 aaPredicted RBP24.96■■□□□ 1.59
DDX56-210ENST00000479440 IQGAP3Q86VI3 1631 aa24.95■■□□□ 1.58
DDX56-210ENST00000479440 ASXL1Q8IXJ9 1541 aa24.93■■□□□ 1.58
DDX56-210ENST00000479440 RXRBP28702 533 aa24.93■■□□□ 1.58
DDX56-210ENST00000479440 NUTM2DQ5VT03 806 aaPredicted RBP24.93■■□□□ 1.58
DDX56-210ENST00000479440 BRINP3Q76B58 766 aa24.92■■□□□ 1.58
DDX56-210ENST00000479440 PTPRUQ92729 1446 aa24.9■■□□□ 1.58
DDX56-210ENST00000479440 AMOTL2Q9Y2J4 779 aa24.9■■□□□ 1.58
DDX56-210ENST00000479440 XRN1Q8IZH2 1706 aaKnown RBP24.89■■□□□ 1.58
DDX56-210ENST00000479440 SETD5Q9C0A6 1442 aa24.89■■□□□ 1.58
DDX56-210ENST00000479440 NHSL1Q5SYE7 1610 aa24.88■■□□□ 1.57
DDX56-210ENST00000479440 SETBP1Q9Y6X0 1596 aa24.88■■□□□ 1.57
DDX56-210ENST00000479440 NUTM2BA6NNL0 878 aaPredicted RBP24.87■■□□□ 1.57
DDX56-210ENST00000479440 NUTM2EB1AL46 878 aaPredicted RBP24.87■■□□□ 1.57
DDX56-210ENST00000479440 NUTM2AQ8IVF1 878 aaPredicted RBP24.87■■□□□ 1.57
DDX56-210ENST00000479440 ROCK1Q13464 1354 aa24.87■■□□□ 1.57
DDX56-210ENST00000479440 MST1RQ04912 1400 aa24.86■■□□□ 1.57
DDX56-210ENST00000479440 NRXN3Q9Y4C0 1643 aa24.85■■□□□ 1.57
DDX56-210ENST00000479440 AFF2P51816 1311 aa24.85■■□□□ 1.57
DDX56-210ENST00000479440 NUP155O75694 1391 aa24.8■■□□□ 1.56
DDX56-210ENST00000479440 RGS12O14924 1447 aa24.79■■□□□ 1.56
DDX56-210ENST00000479440 LRRC59Q96AG4 307 aaKnown RBP24.79■■□□□ 1.56
DDX56-210ENST00000479440 ADGRL3Q9HAR2 1447 aa24.78■■□□□ 1.56
DDX56-210ENST00000479440 SPHKAPQ2M3C7 1700 aa24.78■■□□□ 1.56
DDX56-210ENST00000479440 PNPLA6Q8IY17 1366 aa24.77■■□□□ 1.56
DDX56-210ENST00000479440 C8orf37Q96NL8 207 aa24.76■■□□□ 1.55
DDX56-210ENST00000479440 NALCNQ8IZF0 1738 aa24.75■■□□□ 1.55
DDX56-210ENST00000479440 RBM6P78332 1123 aaKnown RBP24.74■■□□□ 1.55
DDX56-210ENST00000479440 ZNF326Q5BKZ1 582 aaKnown RBP24.74■■□□□ 1.55
DDX56-210ENST00000479440 METP08581 1390 aa24.73■■□□□ 1.55
DDX56-210ENST00000479440 QTRT2Q9H974 415 aaKnown RBP24.7■■□□□ 1.54
DDX56-210ENST00000479440 NEXMIFQ5QGS0 1516 aa24.7■■□□□ 1.54
DDX56-210ENST00000479440 LAMC1P11047 1609 aa24.68■■□□□ 1.54
DDX56-210ENST00000479440 C1orf167Q5SNV9 1468 aa24.67■■□□□ 1.54
DDX56-210ENST00000479440 DDX17Q92841 729 aaKnown RBP24.66■■□□□ 1.54
DDX56-210ENST00000479440 NGLY1Q96IV0 654 aa24.66■■□□□ 1.54
DDX56-210ENST00000479440 PTCH1Q13635 1447 aa24.66■■□□□ 1.54
DDX56-210ENST00000479440 ATAD2Q6PL18 1390 aa24.66■■□□□ 1.54
DDX56-210ENST00000479440 CLTCL1P53675 1640 aa24.64■■□□□ 1.54
DDX56-210ENST00000479440 ADAMTS2O95450 1211 aa24.62■■□□□ 1.53
DDX56-210ENST00000479440 ITGAEP38570 1179 aa24.6■■□□□ 1.53
DDX56-210ENST00000479440 FOXD1Q16676 465 aa24.59■■□□□ 1.53
DDX56-210ENST00000479440 PRAG1Q86YV5 1406 aa24.59■■□□□ 1.53
DDX56-210ENST00000479440 USP21Q9UK80 565 aa24.58■■□□□ 1.53
DDX56-210ENST00000479440 TRPC5Q9UL62 973 aaPredicted RBP24.58■■□□□ 1.53
DDX56-210ENST00000479440 KIF1BO60333 1816 aa24.58■■□□□ 1.53
DDX56-210ENST00000479440 SOS2Q07890 1332 aaPredicted RBP24.58■■□□□ 1.52
DDX56-210ENST00000479440 COL22A1Q8NFW1 1626 aaPredicted RBP24.57■■□□□ 1.52
DDX56-210ENST00000479440 ROBO2Q9HCK4 1378 aa24.54■■□□□ 1.52
DDX56-210ENST00000479440 ATRNO75882 1429 aa24.53■■□□□ 1.52
DDX56-210ENST00000479440 HFM1A2PYH4 1435 aa24.52■■□□□ 1.52
DDX56-210ENST00000479440 FNBP4Q8N3X1 1017 aaPredicted RBP24.52■■□□□ 1.52
DDX56-210ENST00000479440 ORAI2Q96SN7 254 aa24.52■■□□□ 1.52
DDX56-210ENST00000479440 MYOM2P54296 1465 aa24.51■■□□□ 1.51
DDX56-210ENST00000479440 CDC42BPGQ6DT37 1551 aa24.5■■□□□ 1.51
DDX56-210ENST00000479440 VGFO15240 615 aaPredicted RBP24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms