RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 JCADQ9P266 1359 aa26.89■■□□□ 1.9
VIM-204ENST00000478746 ADGRB3O60242 1522 aa26.88■■□□□ 1.89
VIM-204ENST00000478746 HDGFP51858 240 aaKnown RBP26.87■■□□□ 1.89
VIM-204ENST00000478746 NWD1Q149M9 1564 aa26.87■■□□□ 1.89
VIM-204ENST00000478746 PHLPP1O60346 1717 aa26.86■■□□□ 1.89
VIM-204ENST00000478746 FGD6Q6ZV73 1430 aa26.85■■□□□ 1.89
VIM-204ENST00000478746 PPP1R15AO75807 674 aaPredicted RBP26.84■■□□□ 1.89
VIM-204ENST00000478746 PLEKHG1Q9ULL1 1385 aa26.82■■□□□ 1.88
VIM-204ENST00000478746 TBX22Q9Y458 520 aa26.8■■□□□ 1.88
VIM-204ENST00000478746 CHD2O14647 1828 aaKnown RBP26.79■■□□□ 1.88
VIM-204ENST00000478746 C14orf37Q86TY3 774 aa26.79■■□□□ 1.88
VIM-204ENST00000478746 ZFYVE9O95405 1425 aa26.79■■□□□ 1.88
VIM-204ENST00000478746 RIMS2Q9UQ26 1411 aa26.78■■□□□ 1.88
VIM-204ENST00000478746 SETD1AO15047 1707 aaKnown RBP26.78■■□□□ 1.88
VIM-204ENST00000478746 RPRD2Q5VT52 1461 aaKnown RBP26.77■■□□□ 1.88
VIM-204ENST00000478746 MEX3CQ5U5Q3 659 aaKnown RBP26.77■■□□□ 1.88
VIM-204ENST00000478746 NCOA3Q9Y6Q9 1424 aa26.76■■□□□ 1.87
VIM-204ENST00000478746 SPATA31A6Q5VVP1 1343 aa26.76■■□□□ 1.87
VIM-204ENST00000478746 ZNF772Q68DY9 489 aaPredicted RBP26.75■■□□□ 1.87
VIM-204ENST00000478746 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.75■■□□□ 1.87
VIM-204ENST00000478746 CHGAP10645 457 aaKnown RBP26.74■■□□□ 1.87
VIM-204ENST00000478746 MYO5BQ9ULV0 1848 aa26.74■■□□□ 1.87
VIM-204ENST00000478746 CADPS2Q86UW7 1296 aa26.73■■□□□ 1.87
VIM-204ENST00000478746 COL16A1Q07092 1604 aaPredicted RBP26.72■■□□□ 1.87
VIM-204ENST00000478746 ATF3P18847 181 aa26.72■■□□□ 1.87
VIM-204ENST00000478746 C19orf44Q9H6X5 657 aa26.72■■□□□ 1.87
VIM-204ENST00000478746 ADGRL2O95490 1459 aa26.72■■□□□ 1.87
VIM-204ENST00000478746 ANKRD50Q9ULJ7 1429 aa26.72■■□□□ 1.87
VIM-204ENST00000478746 FAM50AQ14320 339 aaKnown RBP26.71■■□□□ 1.87
VIM-204ENST00000478746 NUTM2DQ5VT03 806 aaPredicted RBP26.7■■□□□ 1.86
VIM-204ENST00000478746 UPF1Q92900 1129 aaKnown RBP eCLIP26.7■■□□□ 1.86
VIM-204ENST00000478746 TRIM52Q96A61 297 aa26.7■■□□□ 1.86
VIM-204ENST00000478746 TMEM131LA2VDJ0 1609 aa26.69■■□□□ 1.86
VIM-204ENST00000478746 GCC2Q8IWJ2 1684 aa26.69■■□□□ 1.86
VIM-204ENST00000478746 LRP6O75581 1613 aa26.68■■□□□ 1.86
VIM-204ENST00000478746 PIK3R4Q99570 1358 aa26.64■■□□□ 1.86
VIM-204ENST00000478746 RXRBP28702 533 aa26.64■■□□□ 1.86
VIM-204ENST00000478746 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.64■■□□□ 1.85
VIM-204ENST00000478746 ADAMTS13Q76LX8 1427 aa26.64■■□□□ 1.85
VIM-204ENST00000478746 AHDC1Q5TGY3 1603 aaPredicted RBP26.62■■□□□ 1.85
VIM-204ENST00000478746 AMOTL2Q9Y2J4 779 aa26.62■■□□□ 1.85
VIM-204ENST00000478746 NUTM2BA6NNL0 878 aaPredicted RBP26.61■■□□□ 1.85
VIM-204ENST00000478746 NUTM2EB1AL46 878 aaPredicted RBP26.61■■□□□ 1.85
VIM-204ENST00000478746 NUTM2AQ8IVF1 878 aaPredicted RBP26.61■■□□□ 1.85
VIM-204ENST00000478746 BRINP3Q76B58 766 aa26.6■■□□□ 1.85
VIM-204ENST00000478746 SHPRHQ149N8 1683 aa26.59■■□□□ 1.85
VIM-204ENST00000478746 DIP2AQ14689 1571 aa26.58■■□□□ 1.85
VIM-204ENST00000478746 PTPRUQ92729 1446 aa26.53■■□□□ 1.84
VIM-204ENST00000478746 TRPM2O94759 1503 aa26.53■■□□□ 1.84
VIM-204ENST00000478746 E9PCH4 1651 aa26.52■■□□□ 1.84
VIM-204ENST00000478746 AFF2P51816 1311 aa26.52■■□□□ 1.84
VIM-204ENST00000478746 UNC13BO14795 1591 aa26.51■■□□□ 1.83
VIM-204ENST00000478746 LRRC59Q96AG4 307 aaKnown RBP26.49■■□□□ 1.83
VIM-204ENST00000478746 CDK12Q9NYV4 1490 aaPredicted RBP26.49■■□□□ 1.83
VIM-204ENST00000478746 DCCP43146 1447 aa26.48■■□□□ 1.83
VIM-204ENST00000478746 SETD5Q9C0A6 1442 aa26.47■■□□□ 1.83
VIM-204ENST00000478746 NUP155O75694 1391 aa26.46■■□□□ 1.83
VIM-204ENST00000478746 ASXL1Q8IXJ9 1541 aa26.45■■□□□ 1.83
VIM-204ENST00000478746 QTRT2Q9H974 415 aaKnown RBP26.45■■□□□ 1.82
VIM-204ENST00000478746 MST1RQ04912 1400 aa26.43■■□□□ 1.82
VIM-204ENST00000478746 C8orf37Q96NL8 207 aa26.43■■□□□ 1.82
VIM-204ENST00000478746 IQGAP3Q86VI3 1631 aa26.43■■□□□ 1.82
VIM-204ENST00000478746 ZNF326Q5BKZ1 582 aaKnown RBP26.42■■□□□ 1.82
VIM-204ENST00000478746 ROCK1Q13464 1354 aa26.42■■□□□ 1.82
VIM-204ENST00000478746 RBM6P78332 1123 aaKnown RBP26.41■■□□□ 1.82
VIM-204ENST00000478746 DDX17Q92841 729 aaKnown RBP26.4■■□□□ 1.82
VIM-204ENST00000478746 METP08581 1390 aa26.38■■□□□ 1.81
VIM-204ENST00000478746 NHSL1Q5SYE7 1610 aa26.38■■□□□ 1.81
VIM-204ENST00000478746 XRN1Q8IZH2 1706 aaKnown RBP26.37■■□□□ 1.81
VIM-204ENST00000478746 NGLY1Q96IV0 654 aa26.36■■□□□ 1.81
VIM-204ENST00000478746 SETBP1Q9Y6X0 1596 aa26.36■■□□□ 1.81
VIM-204ENST00000478746 NRXN3Q9Y4C0 1643 aa26.36■■□□□ 1.81
VIM-204ENST00000478746 PNPLA6Q8IY17 1366 aa26.35■■□□□ 1.81
VIM-204ENST00000478746 RGS12O14924 1447 aa26.34■■□□□ 1.81
VIM-204ENST00000478746 ADAMTS2O95450 1211 aa26.33■■□□□ 1.81
VIM-204ENST00000478746 ITGAEP38570 1179 aa26.33■■□□□ 1.81
VIM-204ENST00000478746 ADGRL3Q9HAR2 1447 aa26.32■■□□□ 1.8
VIM-204ENST00000478746 SPHKAPQ2M3C7 1700 aa26.26■■□□□ 1.79
VIM-204ENST00000478746 C1orf167Q5SNV9 1468 aa26.25■■□□□ 1.79
VIM-204ENST00000478746 USP21Q9UK80 565 aa26.25■■□□□ 1.79
VIM-204ENST00000478746 NALCNQ8IZF0 1738 aa26.23■■□□□ 1.79
VIM-204ENST00000478746 ORAI2Q96SN7 254 aa26.23■■□□□ 1.79
VIM-204ENST00000478746 ATAD2Q6PL18 1390 aa26.22■■□□□ 1.79
VIM-204ENST00000478746 TRPC5Q9UL62 973 aaPredicted RBP26.22■■□□□ 1.79
VIM-204ENST00000478746 SRCAPQ6ZRS2 3230 aa26.22■■□□□ 1.79
VIM-204ENST00000478746 SOS2Q07890 1332 aaPredicted RBP26.21■■□□□ 1.79
VIM-204ENST00000478746 NEXMIFQ5QGS0 1516 aa26.19■■□□□ 1.78
VIM-204ENST00000478746 FOXD1Q16676 465 aa26.18■■□□□ 1.78
VIM-204ENST00000478746 FNBP4Q8N3X1 1017 aaPredicted RBP26.18■■□□□ 1.78
VIM-204ENST00000478746 VGFO15240 615 aaPredicted RBP26.17■■□□□ 1.78
VIM-204ENST00000478746 PTCH1Q13635 1447 aa26.15■■□□□ 1.78
VIM-204ENST00000478746 LAMC1P11047 1609 aa26.15■■□□□ 1.78
VIM-204ENST00000478746 ZRANB1Q9UGI0 708 aa26.15■■□□□ 1.78
VIM-204ENST00000478746 CLTCL1P53675 1640 aa26.14■■□□□ 1.78
VIM-204ENST00000478746 ROBO2Q9HCK4 1378 aa26.14■■□□□ 1.78
VIM-204ENST00000478746 KIF1BO60333 1816 aa26.11■■□□□ 1.77
VIM-204ENST00000478746 ATRNO75882 1429 aa26.1■■□□□ 1.77
VIM-204ENST00000478746 PPARGC1BQ86YN6 1023 aaKnown RBP26.09■■□□□ 1.77
VIM-204ENST00000478746 CCDC125Q86Z20 511 aa26.09■■□□□ 1.77
VIM-204ENST00000478746 ESCO1Q5FWF5 840 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms