RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 CDK11AQ9UQ88 783 aaPredicted RBP9.47□□□□□ -0.89
RTF1-203ENST00000473214 C3orf80F5H4A9 247 aa9.46□□□□□ -0.9
RTF1-203ENST00000473214 SMAPO00193 183 aa9.46□□□□□ -0.9
RTF1-203ENST00000473214 MTRQ99707 1265 aa9.46□□□□□ -0.9
RTF1-203ENST00000473214 IL21Q9HBE4 155 aa9.46□□□□□ -0.9
RTF1-203ENST00000473214 HMGB1P09429 215 aaKnown RBP9.45□□□□□ -0.9
RTF1-203ENST00000473214 PDIA4P13667 645 aaKnown RBP9.45□□□□□ -0.9
RTF1-203ENST00000473214 NEUROD2Q15784 382 aa9.45□□□□□ -0.9
RTF1-203ENST00000473214 V9GY48 417 aaPredicted RBP9.45□□□□□ -0.9
RTF1-203ENST00000473214 TATDN2Q93075 761 aa9.44□□□□□ -0.9
RTF1-203ENST00000473214 GRXCR2A6NFK2 248 aa9.43□□□□□ -0.9
RTF1-203ENST00000473214 NBPF26B4DH59 902 aa9.42□□□□□ -0.9
RTF1-203ENST00000473214 OSBPP22059 807 aa9.42□□□□□ -0.9
RTF1-203ENST00000473214 ZNF516Q92618 1163 aa9.42□□□□□ -0.9
RTF1-203ENST00000473214 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.42□□□□□ -0.9
RTF1-203ENST00000473214 RBM27Q9P2N5 1060 aaKnown RBP9.41□□□□□ -0.9
RTF1-203ENST00000473214 PNMA3Q9UL41 463 aa9.41□□□□□ -0.9
RTF1-203ENST00000473214 CDHR5Q9HBB8 845 aa9.4□□□□□ -0.9
RTF1-203ENST00000473214 IGSF3O75054 1194 aa9.39□□□□□ -0.91
RTF1-203ENST00000473214 WDR70Q9NW82 654 aa9.39□□□□□ -0.91
RTF1-203ENST00000473214 ZNF787Q6DD87 383 aa9.38□□□□□ -0.91
RTF1-203ENST00000473214 NUDT18Q6ZVK8 323 aa9.38□□□□□ -0.91
RTF1-203ENST00000473214 PDZRN3Q9UPQ7 1066 aa9.38□□□□□ -0.91
RTF1-203ENST00000473214 HSP90B1P14625 803 aaKnown RBP9.37□□□□□ -0.91
RTF1-203ENST00000473214 APLP1P51693 650 aa9.37□□□□□ -0.91
RTF1-203ENST00000473214 LMOD2Q6P5Q4 547 aa9.37□□□□□ -0.91
RTF1-203ENST00000473214 TTC13Q8NBP0 860 aa9.37□□□□□ -0.91
RTF1-203ENST00000473214 NKX2-3Q8TAU0 364 aa9.37□□□□□ -0.91
RTF1-203ENST00000473214 NPDC1Q9NQX5 325 aaPredicted RBP9.36□□□□□ -0.91
RTF1-203ENST00000473214 HDGFP51858 240 aaKnown RBP9.35□□□□□ -0.91
RTF1-203ENST00000473214 NECTIN2Q92692 538 aa9.35□□□□□ -0.91
RTF1-203ENST00000473214 RNF40O75150 1001 aa9.34□□□□□ -0.91
RTF1-203ENST00000473214 ZNF775Q96BV0 537 aaPredicted RBP9.32□□□□□ -0.92
RTF1-203ENST00000473214 C1orf115Q9H7X2 142 aa9.32□□□□□ -0.92
RTF1-203ENST00000473214 PADI6Q6TGC4 694 aa9.31□□□□□ -0.92
RTF1-203ENST00000473214 GGCXP38435 758 aa9.3□□□□□ -0.92
RTF1-203ENST00000473214 SWT1Q5T5J6 900 aaKnown RBP9.3□□□□□ -0.92
RTF1-203ENST00000473214 COPS2P61201 443 aa9.29□□□□□ -0.92
RTF1-203ENST00000473214 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.29□□□□□ -0.92
RTF1-203ENST00000473214 SLF2Q8IX21 1173 aa9.29□□□□□ -0.92
RTF1-203ENST00000473214 TMUB1Q9BVT8 246 aa9.29□□□□□ -0.92
RTF1-203ENST00000473214 EYA1Q99502 592 aa9.28□□□□□ -0.92
RTF1-203ENST00000473214 CHMP4AQ9BY43 222 aa9.28□□□□□ -0.92
RTF1-203ENST00000473214 KCTD17Q8N5Z5 321 aa9.27□□□□□ -0.93
RTF1-203ENST00000473214 RB1CC1Q8TDY2 1594 aa9.27□□□□□ -0.93
RTF1-203ENST00000473214 TRIM67Q6ZTA4 783 aa9.26□□□□□ -0.93
RTF1-203ENST00000473214 ZPR1O75312 459 aa9.25□□□□□ -0.93
RTF1-203ENST00000473214 ARID3CA6NKF2 412 aa9.24□□□□□ -0.93
RTF1-203ENST00000473214 RAD21O60216 631 aa9.24□□□□□ -0.93
RTF1-203ENST00000473214 P3H3Q8IVL6 736 aa9.23□□□□□ -0.93
RTF1-203ENST00000473214 EMID1Q96A84 441 aaPredicted RBP9.23□□□□□ -0.93
RTF1-203ENST00000473214 PUS7Q96PZ0 661 aaKnown RBP9.23□□□□□ -0.93
RTF1-203ENST00000473214 APBB1O00213 710 aa9.22□□□□□ -0.93
RTF1-203ENST00000473214 SLC4A3P48751 1232 aa9.22□□□□□ -0.93
RTF1-203ENST00000473214 RNF223E7ERA6 249 aa9.21□□□□□ -0.94
RTF1-203ENST00000473214 SLC19A1P41440 591 aa9.21□□□□□ -0.94
RTF1-203ENST00000473214 MLLT3P42568 568 aaPredicted RBP9.21□□□□□ -0.94
RTF1-203ENST00000473214 ARHGEF1Q92888 912 aaKnown RBP9.21□□□□□ -0.94
RTF1-203ENST00000473214 PRR14Q9BWN1 585 aa9.21□□□□□ -0.94
RTF1-203ENST00000473214 SLC24A3Q9HC58 644 aa9.21□□□□□ -0.94
RTF1-203ENST00000473214 UNC13AQ9UPW8 1703 aa9.19□□□□□ -0.94
RTF1-203ENST00000473214 PTGDRQ13258 359 aa9.19□□□□□ -0.94
RTF1-203ENST00000473214 PKDCCQ504Y2 493 aa9.19□□□□□ -0.94
RTF1-203ENST00000473214 PCDHB3Q9Y5E6 796 aa9.19□□□□□ -0.94
RTF1-203ENST00000473214 POTECB2RU33 542 aa9.18□□□□□ -0.94
RTF1-203ENST00000473214 DGAT1O75907 488 aa9.18□□□□□ -0.94
RTF1-203ENST00000473214 SPRYD7Q5W111 196 aa9.18□□□□□ -0.94
RTF1-203ENST00000473214 DNAJB2P25686 324 aa9.17□□□□□ -0.94
RTF1-203ENST00000473214 BLOC1S3Q6QNY0 202 aa9.17□□□□□ -0.94
RTF1-203ENST00000473214 ZNF598Q86UK7 904 aaKnown RBP9.17□□□□□ -0.94
RTF1-203ENST00000473214 ZC3H15Q8WU90 426 aaKnown RBP9.17□□□□□ -0.94
RTF1-203ENST00000473214 PRR20EP86478 221 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 PRR20CP86479 221 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 PRR20DP86480 221 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 PRR20BP86481 221 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 PRR20AP86496 221 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 TMEM134Q9H6X4 195 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 ADGRG1Q9Y653 693 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 BICRAQ9NZM4 1560 aa9.16□□□□□ -0.94
RTF1-203ENST00000473214 RGS22Q8NE09 1264 aa9.15□□□□□ -0.94
RTF1-203ENST00000473214 RBM46Q8TBY0 533 aaKnown RBP9.15□□□□□ -0.94
RTF1-203ENST00000473214 KCNV2Q8TDN2 545 aa9.15□□□□□ -0.94
RTF1-203ENST00000473214 RBM25P49756 843 aaKnown RBP9.14□□□□□ -0.95
RTF1-203ENST00000473214 ANKLE1Q8NAG6 615 aa9.14□□□□□ -0.95
RTF1-203ENST00000473214 MTMR7Q9Y216 660 aa9.14□□□□□ -0.95
RTF1-203ENST00000473214 PPEF1O14829 653 aaPredicted RBP9.13□□□□□ -0.95
RTF1-203ENST00000473214 TLL1O43897 1013 aa9.13□□□□□ -0.95
RTF1-203ENST00000473214 LIAT1Q6ZQX7 453 aa9.13□□□□□ -0.95
RTF1-203ENST00000473214 ACTN4O43707 911 aaKnown RBP9.12□□□□□ -0.95
RTF1-203ENST00000473214 RCCD1A6NED2 376 aa9.11□□□□□ -0.95
RTF1-203ENST00000473214 ZNF697Q5TEC3 545 aa9.11□□□□□ -0.95
RTF1-203ENST00000473214 GDF9O60383 454 aa9.1□□□□□ -0.95
RTF1-203ENST00000473214 S1PR4O95977 384 aa9.1□□□□□ -0.95
RTF1-203ENST00000473214 FAM161AQ3B820 660 aa9.1□□□□□ -0.95
RTF1-203ENST00000473214 NACADO15069 1562 aa9.09□□□□□ -0.95
RTF1-203ENST00000473214 FAM187AA6NFU0 413 aa9.09□□□□□ -0.95
RTF1-203ENST00000473214 TNFRSF10AO00220 468 aa9.09□□□□□ -0.95
RTF1-203ENST00000473214 CFHP08603 1231 aa9.09□□□□□ -0.95
RTF1-203ENST00000473214 KMT5BQ4FZB7 885 aa9.09□□□□□ -0.95
RTF1-203ENST00000473214 AEBP1Q8IUX7 1158 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms