RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 PPP1R15AO75807 674 aaPredicted RBP28.8■■■□□ 2.2
COL7A1-207ENST00000467985 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.8■■■□□ 2.2
COL7A1-207ENST00000467985 BCANQ96GW7 911 aa28.8■■■□□ 2.2
COL7A1-207ENST00000467985 PLEKHG1Q9ULL1 1385 aa28.79■■■□□ 2.2
COL7A1-207ENST00000467985 PIP4K2BP78356 416 aa28.79■■■□□ 2.2
COL7A1-207ENST00000467985 SLC26A8Q96RN1 970 aa28.79■■■□□ 2.2
COL7A1-207ENST00000467985 SPHKAPQ2M3C7 1700 aa28.77■■■□□ 2.2
COL7A1-207ENST00000467985 KCNA6P17658 529 aa28.77■■■□□ 2.2
COL7A1-207ENST00000467985 ALKQ9UM73 1620 aa28.73■■■□□ 2.19
COL7A1-207ENST00000467985 NKTRP30414 1462 aaKnown RBP28.71■■■□□ 2.19
COL7A1-207ENST00000467985 NWD1Q149M9 1564 aa28.71■■■□□ 2.19
COL7A1-207ENST00000467985 XIRP1Q702N8 1843 aaKnown RBP28.7■■■□□ 2.18
COL7A1-207ENST00000467985 TRIM52Q96A61 297 aa28.69■■■□□ 2.18
COL7A1-207ENST00000467985 DISP3Q9P2K9 1392 aa28.68■■■□□ 2.18
COL7A1-207ENST00000467985 HSPA1LP34931 641 aa28.68■■■□□ 2.18
COL7A1-207ENST00000467985 TBX22Q9Y458 520 aa28.68■■■□□ 2.18
COL7A1-207ENST00000467985 TMEM94Q12767 1356 aa28.67■■■□□ 2.18
COL7A1-207ENST00000467985 PROSER2Q86WR7 435 aaPredicted RBP28.67■■■□□ 2.18
COL7A1-207ENST00000467985 TRPM2O94759 1503 aa28.67■■■□□ 2.18
COL7A1-207ENST00000467985 DIP2AQ14689 1571 aa28.67■■■□□ 2.18
COL7A1-207ENST00000467985 CHD2O14647 1828 aaKnown RBP28.64■■■□□ 2.18
COL7A1-207ENST00000467985 NUTM2DQ5VT03 806 aaPredicted RBP28.63■■■□□ 2.17
COL7A1-207ENST00000467985 SENP3Q9H4L4 574 aaPredicted RBP28.63■■■□□ 2.17
COL7A1-207ENST00000467985 SLC4A1APQ9BWU0 796 aaKnown RBP28.61■■■□□ 2.17
COL7A1-207ENST00000467985 CLTCL1P53675 1640 aa28.61■■■□□ 2.17
COL7A1-207ENST00000467985 PIK3R4Q99570 1358 aa28.61■■■□□ 2.17
COL7A1-207ENST00000467985 ADAMTS13Q76LX8 1427 aa28.6■■■□□ 2.17
COL7A1-207ENST00000467985 ZNF326Q5BKZ1 582 aaKnown RBP28.6■■■□□ 2.17
COL7A1-207ENST00000467985 KIF1BO60333 1816 aa28.57■■■□□ 2.16
COL7A1-207ENST00000467985 MSH6P52701 1360 aa28.54■■■□□ 2.16
COL7A1-207ENST00000467985 ACIN1Q9UKV3 1341 aaKnown RBP28.54■■■□□ 2.16
COL7A1-207ENST00000467985 NCOA3Q9Y6Q9 1424 aa28.53■■■□□ 2.16
COL7A1-207ENST00000467985 SETBP1Q9Y6X0 1596 aa28.53■■■□□ 2.16
COL7A1-207ENST00000467985 FAM135BQ49AJ0 1406 aa28.52■■■□□ 2.16
COL7A1-207ENST00000467985 RBM33Q96EV2 1170 aaKnown RBP28.52■■■□□ 2.16
COL7A1-207ENST00000467985 NEXMIFQ5QGS0 1516 aa28.5■■■□□ 2.15
COL7A1-207ENST00000467985 NRXN3Q9Y4C0 1643 aa28.48■■■□□ 2.15
COL7A1-207ENST00000467985 AMOTL2Q9Y2J4 779 aa28.45■■■□□ 2.14
COL7A1-207ENST00000467985 RPGRIP1LQ68CZ1 1315 aa28.44■■■□□ 2.14
COL7A1-207ENST00000467985 MED1Q15648 1581 aaPredicted RBP28.43■■■□□ 2.14
COL7A1-207ENST00000467985 VGFO15240 615 aaPredicted RBP28.43■■■□□ 2.14
COL7A1-207ENST00000467985 C14orf37Q86TY3 774 aa28.43■■■□□ 2.14
COL7A1-207ENST00000467985 MPHOSPH9Q99550 1183 aa28.43■■■□□ 2.14
COL7A1-207ENST00000467985 SLAIN2Q9P270 581 aa28.43■■■□□ 2.14
COL7A1-207ENST00000467985 SETD5Q9C0A6 1442 aa28.43■■■□□ 2.14
COL7A1-207ENST00000467985 ROBO1Q9Y6N7 1651 aa28.42■■■□□ 2.14
COL7A1-207ENST00000467985 PTPRUQ92729 1446 aa28.42■■■□□ 2.14
COL7A1-207ENST00000467985 XRN1Q8IZH2 1706 aaKnown RBP28.4■■■□□ 2.14
COL7A1-207ENST00000467985 CCDC144AA2RUR9 1427 aa28.39■■■□□ 2.14
COL7A1-207ENST00000467985 FOXD1Q16676 465 aa28.39■■■□□ 2.14
COL7A1-207ENST00000467985 ILDR2Q71H61 639 aa28.39■■■□□ 2.14
COL7A1-207ENST00000467985 C19orf44Q9H6X5 657 aa28.39■■■□□ 2.14
COL7A1-207ENST00000467985 METP08581 1390 aa28.37■■■□□ 2.13
COL7A1-207ENST00000467985 CADPS2Q86UW7 1296 aa28.37■■■□□ 2.13
COL7A1-207ENST00000467985 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.35■■■□□ 2.13
COL7A1-207ENST00000467985 ATF3P18847 181 aa28.35■■■□□ 2.13
COL7A1-207ENST00000467985 PPLO60437 1756 aa28.34■■■□□ 2.13
COL7A1-207ENST00000467985 DCCP43146 1447 aa28.31■■■□□ 2.12
COL7A1-207ENST00000467985 SPATA31E1Q6ZUB1 1445 aa28.28■■■□□ 2.12
COL7A1-207ENST00000467985 RAB3GAP2Q9H2M9 1393 aa28.28■■■□□ 2.12
COL7A1-207ENST00000467985 PHF23Q9BUL5 403 aaPredicted RBP28.28■■■□□ 2.12
COL7A1-207ENST00000467985 SETD1AO15047 1707 aaKnown RBP28.26■■■□□ 2.12
COL7A1-207ENST00000467985 PHLPP1O60346 1717 aa28.26■■■□□ 2.11
COL7A1-207ENST00000467985 ANKRD30BQ9BXX2 1392 aa28.25■■■□□ 2.11
COL7A1-207ENST00000467985 SOCS7O14512 581 aa28.24■■■□□ 2.11
COL7A1-207ENST00000467985 PTCH1Q13635 1447 aa28.24■■■□□ 2.11
COL7A1-207ENST00000467985 RGL3Q3MIN7 710 aa28.23■■■□□ 2.11
COL7A1-207ENST00000467985 PRAG1Q86YV5 1406 aa28.22■■■□□ 2.11
COL7A1-207ENST00000467985 ADGRL3Q9HAR2 1447 aa28.22■■■□□ 2.11
COL7A1-207ENST00000467985 IFT172Q9UG01 1749 aa28.21■■■□□ 2.11
COL7A1-207ENST00000467985 HRCP23327 699 aa28.18■■■□□ 2.1
COL7A1-207ENST00000467985 AHDC1Q5TGY3 1603 aaPredicted RBP28.18■■■□□ 2.1
COL7A1-207ENST00000467985 ADGRF5Q8IZF2 1346 aa28.18■■■□□ 2.1
COL7A1-207ENST00000467985 JCADQ9P266 1359 aa28.17■■■□□ 2.1
COL7A1-207ENST00000467985 COL16A1Q07092 1604 aaPredicted RBP28.17■■■□□ 2.1
COL7A1-207ENST00000467985 NALCNQ8IZF0 1738 aa28.16■■■□□ 2.1
COL7A1-207ENST00000467985 MST1RQ04912 1400 aa28.16■■■□□ 2.1
COL7A1-207ENST00000467985 ROBO2Q9HCK4 1378 aa28.15■■■□□ 2.1
COL7A1-207ENST00000467985 BRINP3Q76B58 766 aa28.15■■■□□ 2.1
COL7A1-207ENST00000467985 PIK3C2GO75747 1445 aa28.11■■■□□ 2.09
COL7A1-207ENST00000467985 ASXL1Q8IXJ9 1541 aa28.11■■■□□ 2.09
COL7A1-207ENST00000467985 SPATA31A6Q5VVP1 1343 aa28.06■■■□□ 2.08
COL7A1-207ENST00000467985 LRPPRCP42704 1394 aaKnown RBP28.06■■■□□ 2.08
COL7A1-207ENST00000467985 TECPR2O15040 1411 aa28.06■■■□□ 2.08
COL7A1-207ENST00000467985 MYOM2P54296 1465 aa28.06■■■□□ 2.08
COL7A1-207ENST00000467985 SHPRHQ149N8 1683 aa28.04■■■□□ 2.08
COL7A1-207ENST00000467985 NHSL1Q5SYE7 1610 aa28.04■■■□□ 2.08
COL7A1-207ENST00000467985 NRXN1Q9ULB1 1477 aa28.04■■■□□ 2.08
COL7A1-207ENST00000467985 C1orf167Q5SNV9 1468 aa28.03■■■□□ 2.08
COL7A1-207ENST00000467985 ABCC11Q96J66 1382 aa28.03■■■□□ 2.08
COL7A1-207ENST00000467985 RGS17Q9UGC6 210 aaPredicted RBP28.02■■■□□ 2.08
COL7A1-207ENST00000467985 LAMC1P11047 1609 aa28.02■■■□□ 2.08
COL7A1-207ENST00000467985 KNDC1Q76NI1 1749 aa28.01■■■□□ 2.07
COL7A1-207ENST00000467985 STK26Q9P289 416 aa28.01■■■□□ 2.07
COL7A1-207ENST00000467985 C14orf93Q9H972 538 aaKnown RBP28■■■□□ 2.07
COL7A1-207ENST00000467985 TMEM132EQ6IEE7 984 aa27.99■■■□□ 2.07
COL7A1-207ENST00000467985 YTHDC2Q9H6S0 1430 aaKnown RBP27.99■■■□□ 2.07
COL7A1-207ENST00000467985 CDC42BPGQ6DT37 1551 aa27.99■■■□□ 2.07
COL7A1-207ENST00000467985 LRRC59Q96AG4 307 aaKnown RBP27.98■■■□□ 2.07
COL7A1-207ENST00000467985 SIRT1Q96EB6 747 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 187.9 ms