RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 RABGEF1Q9UJ41 708 aa8.92□□□□□ -0.98
VPS41-211ENST00000466017 IFT140Q96RY7 1462 aa8.91□□□□□ -0.98
VPS41-211ENST00000466017 RUSC2Q8N2Y8 1516 aa8.9□□□□□ -0.98
VPS41-211ENST00000466017 CUX2O14529 1486 aa8.9□□□□□ -0.98
VPS41-211ENST00000466017 TTC13Q8NBP0 860 aa8.9□□□□□ -0.98
VPS41-211ENST00000466017 KCTD12Q96CX2 325 aaKnown RBP8.9□□□□□ -0.98
VPS41-211ENST00000466017 WDR97A6NE52 1622 aa8.9□□□□□ -0.99
VPS41-211ENST00000466017 RAD54L2Q9Y4B4 1467 aa8.89□□□□□ -0.99
VPS41-211ENST00000466017 IGF1RP08069 1367 aa8.89□□□□□ -0.99
VPS41-211ENST00000466017 TARBP1Q13395 1621 aaKnown RBP8.88□□□□□ -0.99
VPS41-211ENST00000466017 NUDT18Q6ZVK8 323 aa8.87□□□□□ -0.99
VPS41-211ENST00000466017 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.87□□□□□ -0.99
VPS41-211ENST00000466017 MRPL50Q8N5N7 158 aaKnown RBP8.87□□□□□ -0.99
VPS41-211ENST00000466017 PRXQ9BXM0 1461 aa8.86□□□□□ -0.99
VPS41-211ENST00000466017 ONECUT3O60422 494 aaPredicted RBP8.86□□□□□ -0.99
VPS41-211ENST00000466017 FAM9AQ8IZU1 332 aaPredicted RBP8.86□□□□□ -0.99
VPS41-211ENST00000466017 TATDN2Q93075 761 aa8.86□□□□□ -0.99
VPS41-211ENST00000466017 PNMA3Q9UL41 463 aa8.85□□□□□ -0.99
VPS41-211ENST00000466017 ERICH3Q5RHP9 1530 aa8.85□□□□□ -0.99
VPS41-211ENST00000466017 GAPVD1Q14C86 1478 aa8.84□□□□□ -0.99
VPS41-211ENST00000466017 LOC105371045A0A1W2PR82 267 aa8.84□□□□□ -0.99
VPS41-211ENST00000466017 BCAMP50895 628 aa8.84□□□□□ -0.99
VPS41-211ENST00000466017 ZFRQ96KR1 1074 aaKnown RBP8.84□□□□□ -0.99
VPS41-211ENST00000466017 CARMIL1Q5VZK9 1371 aa8.84□□□□□ -0.99
VPS41-211ENST00000466017 TDRD9Q8NDG6 1382 aaKnown RBP8.84□□□□□ -0.99
VPS41-211ENST00000466017 PTPN5P54829 565 aa8.83□□□□□ -1
VPS41-211ENST00000466017 PACS2Q86VP3 889 aa8.83□□□□□ -1
VPS41-211ENST00000466017 CERKQ8TCT0 537 aa8.83□□□□□ -1
VPS41-211ENST00000466017 WNT2BQ93097 391 aa8.83□□□□□ -1
VPS41-211ENST00000466017 EYA1Q99502 592 aa8.83□□□□□ -1
VPS41-211ENST00000466017 KIF21BO75037 1637 aa8.83□□□□□ -1
VPS41-211ENST00000466017 ABCA5Q8WWZ7 1642 aa8.83□□□□□ -1
VPS41-211ENST00000466017 STAC3Q96MF2 364 aa8.82□□□□□ -1
VPS41-211ENST00000466017 TNIKQ9UKE5 1360 aa8.82□□□□□ -1
VPS41-211ENST00000466017 FCHSD2O94868 740 aa8.81□□□□□ -1
VPS41-211ENST00000466017 SMYD5Q6GMV2 418 aa8.81□□□□□ -1
VPS41-211ENST00000466017 THSD4Q6ZMP0 1018 aa8.81□□□□□ -1
VPS41-211ENST00000466017 NBPF3Q9H094 633 aa8.81□□□□□ -1
VPS41-211ENST00000466017 ADGRG1Q9Y653 693 aa8.81□□□□□ -1
VPS41-211ENST00000466017 GOLGA3Q08378 1498 aa8.81□□□□□ -1
VPS41-211ENST00000466017 GRIN2BQ13224 1484 aa8.81□□□□□ -1
VPS41-211ENST00000466017 FAM98CQ17RN3 349 aaKnown RBP8.8□□□□□ -1
VPS41-211ENST00000466017 NLRP7Q8WX94 980 aa8.8□□□□□ -1
VPS41-211ENST00000466017 PHOX2BQ99453 314 aa8.8□□□□□ -1
VPS41-211ENST00000466017 RAPGEF2Q9Y4G8 1499 aa8.8□□□□□ -1
VPS41-211ENST00000466017 AQRO60306 1485 aaKnown RBP eCLIP8.79□□□□□ -1
VPS41-211ENST00000466017 LMOD2Q6P5Q4 547 aa8.79□□□□□ -1
VPS41-211ENST00000466017 SAMD7Q7Z3H4 446 aa8.79□□□□□ -1
VPS41-211ENST00000466017 GPIHBP1Q8IV16 184 aa8.79□□□□□ -1
VPS41-211ENST00000466017 RBM27Q9P2N5 1060 aaKnown RBP8.79□□□□□ -1
VPS41-211ENST00000466017 FHAD1B1AJZ9 1412 aa8.79□□□□□ -1
VPS41-211ENST00000466017 CUL7Q14999 1698 aa8.78□□□□□ -1
VPS41-211ENST00000466017 GOLGA8CPA6NN73 597 aa8.78□□□□□ -1
VPS41-211ENST00000466017 LAPTM4BQ86VI4 370 aa8.78□□□□□ -1
VPS41-211ENST00000466017 ZNF608Q9ULD9 1512 aaPredicted RBP8.78□□□□□ -1
VPS41-211ENST00000466017 GNPATO15228 680 aa8.77□□□□□ -1.01
VPS41-211ENST00000466017 SOWAHBA6NEL2 793 aa8.76□□□□□ -1.01
VPS41-211ENST00000466017 UBTFP17480 764 aaKnown RBP8.76□□□□□ -1.01
VPS41-211ENST00000466017 HIC1Q14526 733 aa8.76□□□□□ -1.01
VPS41-211ENST00000466017 WBP1LQ9NX94 342 aa8.76□□□□□ -1.01
VPS41-211ENST00000466017 MAGI1Q96QZ7 1491 aaPredicted RBP8.76□□□□□ -1.01
VPS41-211ENST00000466017 NBPF26B4DH59 902 aa8.75□□□□□ -1.01
VPS41-211ENST00000466017 SWT1Q5T5J6 900 aaKnown RBP8.75□□□□□ -1.01
VPS41-211ENST00000466017 EIF4G3O43432 1585 aaKnown RBP8.73□□□□□ -1.01
VPS41-211ENST00000466017 PBRM1Q86U86 1689 aa8.73□□□□□ -1.01
VPS41-211ENST00000466017 RCCD1A6NED2 376 aa8.73□□□□□ -1.01
VPS41-211ENST00000466017 ANKK1Q8NFD2 765 aa8.73□□□□□ -1.01
VPS41-211ENST00000466017 PXYLP1Q8TE99 480 aa8.73□□□□□ -1.01
VPS41-211ENST00000466017 HCSTQ9UBK5 93 aa8.73□□□□□ -1.01
VPS41-211ENST00000466017 ZC3H15Q8WU90 426 aaKnown RBP8.72□□□□□ -1.01
VPS41-211ENST00000466017 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.72□□□□□ -1.01
VPS41-211ENST00000466017 HPS5Q9UPZ3 1129 aa8.72□□□□□ -1.01
VPS41-211ENST00000466017 METTL3Q86U44 580 aaKnown RBP8.71□□□□□ -1.02
VPS41-211ENST00000466017 SYNJ2O15056 1496 aa8.7□□□□□ -1.02
VPS41-211ENST00000466017 SNAPC4Q5SXM2 1469 aa8.7□□□□□ -1.02
VPS41-211ENST00000466017 ADAMTS12P58397 1594 aa8.7□□□□□ -1.02
VPS41-211ENST00000466017 LRCH3Q96II8 777 aa8.7□□□□□ -1.02
VPS41-211ENST00000466017 CHMP7Q8WUX9 453 aaPredicted RBP8.69□□□□□ -1.02
VPS41-211ENST00000466017 IRF6O14896 467 aa8.68□□□□□ -1.02
VPS41-211ENST00000466017 ZMYND10O75800 440 aa8.68□□□□□ -1.02
VPS41-211ENST00000466017 RBM46Q8TBY0 533 aaKnown RBP8.68□□□□□ -1.02
VPS41-211ENST00000466017 TMEM134Q9H6X4 195 aa8.68□□□□□ -1.02
VPS41-211ENST00000466017 CEP162Q5TB80 1403 aa8.68□□□□□ -1.02
VPS41-211ENST00000466017 GRIN2AQ12879 1464 aa8.68□□□□□ -1.02
VPS41-211ENST00000466017 SLC10A3P09131 477 aa8.67□□□□□ -1.02
VPS41-211ENST00000466017 APLP1P51693 650 aa8.67□□□□□ -1.02
VPS41-211ENST00000466017 TSR3Q9UJK0 312 aaKnown RBP8.67□□□□□ -1.02
VPS41-211ENST00000466017 KIAA0586Q9BVV6 1533 aa8.66□□□□□ -1.02
VPS41-211ENST00000466017 NUP160Q12769 1436 aa8.66□□□□□ -1.02
VPS41-211ENST00000466017 RNF40O75150 1001 aa8.66□□□□□ -1.02
VPS41-211ENST00000466017 CLIP1P30622 1438 aa8.65□□□□□ -1.02
VPS41-211ENST00000466017 DNAJB2P25686 324 aa8.65□□□□□ -1.02
VPS41-211ENST00000466017 BARGINQ6ZT62 677 aa8.65□□□□□ -1.02
VPS41-211ENST00000466017 CCDC102AQ96A19 550 aa8.65□□□□□ -1.02
VPS41-211ENST00000466017 REPIN1Q9BWE0 567 aaKnown RBP8.65□□□□□ -1.02
VPS41-211ENST00000466017 OATP04181 439 aa8.64□□□□□ -1.03
VPS41-211ENST00000466017 PPP4CP60510 307 aa8.64□□□□□ -1.03
VPS41-211ENST00000466017 MAP2K5Q13163 448 aa8.64□□□□□ -1.03
VPS41-211ENST00000466017 TULP1O00294 542 aaPredicted RBP8.63□□□□□ -1.03
VPS41-211ENST00000466017 PLA2G2EQ9NZK7 142 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms