RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 RIMS2Q9UQ26 1411 aa15.39■□□□□ 0.05
SF3A3-204ENST00000462258 CLTCL1P53675 1640 aa15.39■□□□□ 0.05
SF3A3-204ENST00000462258 ALKQ9UM73 1620 aa15.37■□□□□ 0.05
SF3A3-204ENST00000462258 KIF1BO60333 1816 aa15.36■□□□□ 0.05
SF3A3-204ENST00000462258 DIP2AQ14689 1571 aa15.36■□□□□ 0.05
SF3A3-204ENST00000462258 PLEKHG1Q9ULL1 1385 aa15.36■□□□□ 0.05
SF3A3-204ENST00000462258 NKTRP30414 1462 aaKnown RBP15.35■□□□□ 0.05
SF3A3-204ENST00000462258 CHGAP10645 457 aaKnown RBP15.35■□□□□ 0.05
SF3A3-204ENST00000462258 PPP1R15AO75807 674 aaPredicted RBP15.34■□□□□ 0.05
SF3A3-204ENST00000462258 CHD2O14647 1828 aaKnown RBP15.33■□□□□ 0.05
SF3A3-204ENST00000462258 NRXN3Q9Y4C0 1643 aa15.32■□□□□ 0.04
SF3A3-204ENST00000462258 SLC26A8Q96RN1 970 aa15.31■□□□□ 0.04
SF3A3-204ENST00000462258 TOM1O60784 492 aa15.3■□□□□ 0.04
SF3A3-204ENST00000462258 NEXMIFQ5QGS0 1516 aa15.3■□□□□ 0.04
SF3A3-204ENST00000462258 TRIM52Q96A61 297 aa15.3■□□□□ 0.04
SF3A3-204ENST00000462258 BCANQ96GW7 911 aa15.3■□□□□ 0.04
SF3A3-204ENST00000462258 SCAF1Q9H7N4 1312 aaKnown RBP15.3■□□□□ 0.04
SF3A3-204ENST00000462258 SETBP1Q9Y6X0 1596 aa15.29■□□□□ 0.04
SF3A3-204ENST00000462258 ADAMTS13Q76LX8 1427 aa15.29■□□□□ 0.04
SF3A3-204ENST00000462258 HDGFP51858 240 aaKnown RBP15.29■□□□□ 0.04
SF3A3-204ENST00000462258 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.29■□□□□ 0.04
SF3A3-204ENST00000462258 PIP4K2BP78356 416 aa15.28■□□□□ 0.04
SF3A3-204ENST00000462258 SENP3Q9H4L4 574 aaPredicted RBP15.28■□□□□ 0.04
SF3A3-204ENST00000462258 TMEM94Q12767 1356 aa15.27■□□□□ 0.04
SF3A3-204ENST00000462258 KCNA6P17658 529 aa15.27■□□□□ 0.04
SF3A3-204ENST00000462258 NUTM2DQ5VT03 806 aaPredicted RBP15.26■□□□□ 0.03
SF3A3-204ENST00000462258 SLC4A1APQ9BWU0 796 aaKnown RBP15.26■□□□□ 0.03
SF3A3-204ENST00000462258 PPLO60437 1756 aa15.25■□□□□ 0.03
SF3A3-204ENST00000462258 XRN1Q8IZH2 1706 aaKnown RBP15.25■□□□□ 0.03
SF3A3-204ENST00000462258 PIK3R4Q99570 1358 aa15.24■□□□□ 0.03
SF3A3-204ENST00000462258 ZNF326Q5BKZ1 582 aaKnown RBP15.23■□□□□ 0.03
SF3A3-204ENST00000462258 SETD1AO15047 1707 aaKnown RBP15.23■□□□□ 0.03
SF3A3-204ENST00000462258 TBX22Q9Y458 520 aa15.22■□□□□ 0.03
SF3A3-204ENST00000462258 ROBO1Q9Y6N7 1651 aa15.22■□□□□ 0.03
SF3A3-204ENST00000462258 IFT172Q9UG01 1749 aa15.21■□□□□ 0.03
SF3A3-204ENST00000462258 SETD5Q9C0A6 1442 aa15.21■□□□□ 0.03
SF3A3-204ENST00000462258 HSPA1LP34931 641 aa15.21■□□□□ 0.03
SF3A3-204ENST00000462258 PROSER2Q86WR7 435 aaPredicted RBP15.21■□□□□ 0.03
SF3A3-204ENST00000462258 MSH6P52701 1360 aa15.2■□□□□ 0.02
SF3A3-204ENST00000462258 DISP3Q9P2K9 1392 aa15.2■□□□□ 0.02
SF3A3-204ENST00000462258 CCDC144AA2RUR9 1427 aa15.19■□□□□ 0.02
SF3A3-204ENST00000462258 RBM33Q96EV2 1170 aaKnown RBP15.19■□□□□ 0.02
SF3A3-204ENST00000462258 MED1Q15648 1581 aaPredicted RBP15.19■□□□□ 0.02
SF3A3-204ENST00000462258 PTPRUQ92729 1446 aa15.18■□□□□ 0.02
SF3A3-204ENST00000462258 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.18■□□□□ 0.02
SF3A3-204ENST00000462258 FOXD1Q16676 465 aa15.18■□□□□ 0.02
SF3A3-204ENST00000462258 RAB3GAP2Q9H2M9 1393 aa15.17■□□□□ 0.02
SF3A3-204ENST00000462258 NCOA3Q9Y6Q9 1424 aa15.17■□□□□ 0.02
SF3A3-204ENST00000462258 ACIN1Q9UKV3 1341 aaKnown RBP15.16■□□□□ 0.02
SF3A3-204ENST00000462258 MPHOSPH9Q99550 1183 aa15.15■□□□□ 0.02
SF3A3-204ENST00000462258 FAM135BQ49AJ0 1406 aa15.15■□□□□ 0.02
SF3A3-204ENST00000462258 NALCNQ8IZF0 1738 aa15.14■□□□□ 0.01
SF3A3-204ENST00000462258 METP08581 1390 aa15.14■□□□□ 0.01
SF3A3-204ENST00000462258 SPATA31E1Q6ZUB1 1445 aa15.14■□□□□ 0.01
SF3A3-204ENST00000462258 PHLPP1O60346 1717 aa15.12■□□□□ 0.01
SF3A3-204ENST00000462258 AMOTL2Q9Y2J4 779 aa15.12■□□□□ 0.01
SF3A3-204ENST00000462258 RPGRIP1LQ68CZ1 1315 aa15.12■□□□□ 0.01
SF3A3-204ENST00000462258 C14orf37Q86TY3 774 aa15.11■□□□□ 0.01
SF3A3-204ENST00000462258 DCCP43146 1447 aa15.1■□□□□ 0.01
SF3A3-204ENST00000462258 PTCH1Q13635 1447 aa15.1■□□□□ 0.01
SF3A3-204ENST00000462258 VGFO15240 615 aaPredicted RBP15.1■□□□□ 0.01
SF3A3-204ENST00000462258 PRAG1Q86YV5 1406 aa15.09■□□□□ 0.01
SF3A3-204ENST00000462258 COL16A1Q07092 1604 aaPredicted RBP15.09■□□□□ 0.01
SF3A3-204ENST00000462258 KNDC1Q76NI1 1749 aa15.09■□□□□ 0.01
SF3A3-204ENST00000462258 ADGRL3Q9HAR2 1447 aa15.09■□□□□ 0.01
SF3A3-204ENST00000462258 LAMC1P11047 1609 aa15.07■□□□□ 0
SF3A3-204ENST00000462258 AHDC1Q5TGY3 1603 aaPredicted RBP15.07■□□□□ 0
SF3A3-204ENST00000462258 ANKRD30BQ9BXX2 1392 aa15.07■□□□□ 0
SF3A3-204ENST00000462258 ASXL1Q8IXJ9 1541 aa15.07■□□□□ 0
SF3A3-204ENST00000462258 CADPS2Q86UW7 1296 aa15.06■□□□□ 0
SF3A3-204ENST00000462258 SLAIN2Q9P270 581 aa15.06■□□□□ 0
SF3A3-204ENST00000462258 PIK3C2GO75747 1445 aa15.06■□□□□ 0
SF3A3-204ENST00000462258 MYOM2P54296 1465 aa15.06■□□□□ 0
SF3A3-204ENST00000462258 ATF3P18847 181 aa15.05■□□□□ -0
SF3A3-204ENST00000462258 C19orf44Q9H6X5 657 aa15.05■□□□□ -0
SF3A3-204ENST00000462258 NHSL1Q5SYE7 1610 aa15.05■□□□□ -0
SF3A3-204ENST00000462258 MST1RQ04912 1400 aa15.04■□□□□ -0
SF3A3-204ENST00000462258 ADGRF5Q8IZF2 1346 aa15.04■□□□□ -0
SF3A3-204ENST00000462258 RGL3Q3MIN7 710 aa15.04■□□□□ -0
SF3A3-204ENST00000462258 ROBO2Q9HCK4 1378 aa15.03■□□□□ -0
SF3A3-204ENST00000462258 NRXN1Q9ULB1 1477 aa15.02■□□□□ -0
SF3A3-204ENST00000462258 ILDR2Q71H61 639 aa15.02■□□□□ -0
SF3A3-204ENST00000462258 SHPRHQ149N8 1683 aa15.02□□□□□ -0.01
SF3A3-204ENST00000462258 CDC42BPGQ6DT37 1551 aa15.02□□□□□ -0.01
SF3A3-204ENST00000462258 TECPR2O15040 1411 aa15□□□□□ -0.01
SF3A3-204ENST00000462258 HRCP23327 699 aa14.99□□□□□ -0.01
SF3A3-204ENST00000462258 JCADQ9P266 1359 aa14.98□□□□□ -0.01
SF3A3-204ENST00000462258 BRINP3Q76B58 766 aa14.97□□□□□ -0.01
SF3A3-204ENST00000462258 LRPPRCP42704 1394 aaKnown RBP14.97□□□□□ -0.01
SF3A3-204ENST00000462258 YTHDC2Q9H6S0 1430 aaKnown RBP14.96□□□□□ -0.01
SF3A3-204ENST00000462258 C1orf167Q5SNV9 1468 aa14.95□□□□□ -0.02
SF3A3-204ENST00000462258 FMN2Q9NZ56 1722 aa14.95□□□□□ -0.02
SF3A3-204ENST00000462258 LRP6O75581 1613 aa14.93□□□□□ -0.02
SF3A3-204ENST00000462258 ABCC11Q96J66 1382 aa14.93□□□□□ -0.02
SF3A3-204ENST00000462258 ADGRB1O14514 1584 aa14.93□□□□□ -0.02
SF3A3-204ENST00000462258 TMEM132EQ6IEE7 984 aa14.92□□□□□ -0.02
SF3A3-204ENST00000462258 STK26Q9P289 416 aa14.92□□□□□ -0.02
SF3A3-204ENST00000462258 PLEKHH1Q9ULM0 1364 aa14.91□□□□□ -0.02
SF3A3-204ENST00000462258 DLC1Q96QB1 1528 aa14.91□□□□□ -0.02
SF3A3-204ENST00000462258 C14orf93Q9H972 538 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms