RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 EPRSP07814 1512 aaKnown RBP18.4■□□□□ 0.54
PTPRU-205ENST00000460170 CFAP70Q5T0N1 1121 aa18.4■□□□□ 0.54
PTPRU-205ENST00000460170 GOLGA6L6A8MZA4 724 aa18.39■□□□□ 0.54
PTPRU-205ENST00000460170 LTV1Q96GA3 475 aaPredicted RBP18.39■□□□□ 0.54
PTPRU-205ENST00000460170 PPP2R1AP30153 589 aa18.39■□□□□ 0.53
PTPRU-205ENST00000460170 ROCK1Q13464 1354 aa18.39■□□□□ 0.53
PTPRU-205ENST00000460170 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
PTPRU-205ENST00000460170 FOXD4L1Q9NU39 408 aa18.38■□□□□ 0.53
PTPRU-205ENST00000460170 CCDC184Q52MB2 194 aa18.38■□□□□ 0.53
PTPRU-205ENST00000460170 CDK11BP21127 795 aaKnown RBP18.37■□□□□ 0.53
PTPRU-205ENST00000460170 CYB5RLQ6IPT4 315 aa18.37■□□□□ 0.53
PTPRU-205ENST00000460170 NRDCO43847 1150 aa18.37■□□□□ 0.53
PTPRU-205ENST00000460170 TMEM132EQ6IEE7 984 aa18.37■□□□□ 0.53
PTPRU-205ENST00000460170 SNAPC4Q5SXM2 1469 aa18.37■□□□□ 0.53
PTPRU-205ENST00000460170 ST18O60284 1047 aa18.36■□□□□ 0.53
PTPRU-205ENST00000460170 CDK13Q14004 1512 aaKnown RBP18.36■□□□□ 0.53
PTPRU-205ENST00000460170 GPATCH3Q96I76 525 aa18.36■□□□□ 0.53
PTPRU-205ENST00000460170 KIAA0586Q9BVV6 1533 aa18.35■□□□□ 0.53
PTPRU-205ENST00000460170 SYAP1Q96A49 352 aaPredicted RBP18.35■□□□□ 0.53
PTPRU-205ENST00000460170 AAMPQ13685 434 aa18.35■□□□□ 0.53
PTPRU-205ENST00000460170 GSE1Q14687 1217 aa18.34■□□□□ 0.53
PTPRU-205ENST00000460170 GGNBP2Q9H3C7 697 aa18.34■□□□□ 0.53
PTPRU-205ENST00000460170 PLEKHH2Q8IVE3 1493 aa18.34■□□□□ 0.53
PTPRU-205ENST00000460170 NPHP1O15259 732 aa18.33■□□□□ 0.53
PTPRU-205ENST00000460170 MTHFSP49914 203 aa18.33■□□□□ 0.53
PTPRU-205ENST00000460170 DDX11L8A8MPP1 907 aa18.33■□□□□ 0.52
PTPRU-205ENST00000460170 CHAF1AQ13111 956 aaPredicted RBP18.33■□□□□ 0.52
PTPRU-205ENST00000460170 PANK1Q8TE04 598 aa18.33■□□□□ 0.52
PTPRU-205ENST00000460170 API5Q9BZZ5 524 aaKnown RBP18.33■□□□□ 0.52
PTPRU-205ENST00000460170 CABP2Q9NPB3 220 aa18.32■□□□□ 0.52
PTPRU-205ENST00000460170 KIF16BQ96L93 1317 aa18.32■□□□□ 0.52
PTPRU-205ENST00000460170 AKNAQ7Z591 1439 aa18.32■□□□□ 0.52
PTPRU-205ENST00000460170 TCP11L2Q8N4U5 519 aa18.32■□□□□ 0.52
PTPRU-205ENST00000460170 DRC7Q8IY82 874 aa18.3■□□□□ 0.52
PTPRU-205ENST00000460170 NOL8Q76FK4 1167 aaKnown RBP18.3■□□□□ 0.52
PTPRU-205ENST00000460170 ANKRD30BQ9BXX2 1392 aa18.3■□□□□ 0.52
PTPRU-205ENST00000460170 SMG6Q86US8 1419 aaKnown RBP18.3■□□□□ 0.52
PTPRU-205ENST00000460170 IQGAP2Q13576 1575 aa18.29■□□□□ 0.52
PTPRU-205ENST00000460170 CUL7Q14999 1698 aa18.29■□□□□ 0.52
PTPRU-205ENST00000460170 ZNF330Q9Y3S2 320 aaPredicted RBP18.29■□□□□ 0.52
PTPRU-205ENST00000460170 GNAI1P63096 354 aa18.29■□□□□ 0.52
PTPRU-205ENST00000460170 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.28■□□□□ 0.52
PTPRU-205ENST00000460170 HTATSF1O43719 755 aaKnown RBP18.27■□□□□ 0.52
PTPRU-205ENST00000460170 KIAA2012Q0VF49 1180 aa18.27■□□□□ 0.52
PTPRU-205ENST00000460170 PTPN23Q9H3S7 1636 aa18.26■□□□□ 0.51
PTPRU-205ENST00000460170 BIVM-ERCC5R4GMW8 1640 aa18.26■□□□□ 0.51
PTPRU-205ENST00000460170 RILPL2Q969X0 211 aa18.26■□□□□ 0.51
PTPRU-205ENST00000460170 CHMP3Q9Y3E7 222 aa18.26■□□□□ 0.51
PTPRU-205ENST00000460170 ERBINQ96RT1 1412 aa18.26■□□□□ 0.51
PTPRU-205ENST00000460170 HMOX1P09601 288 aa18.26■□□□□ 0.51
PTPRU-205ENST00000460170 C11orf95C9JLR9 678 aaPredicted RBP18.25■□□□□ 0.51
PTPRU-205ENST00000460170 SCAPERQ9BY12 1400 aa18.25■□□□□ 0.51
PTPRU-205ENST00000460170 ABCC5O15440 1437 aa18.25■□□□□ 0.51
PTPRU-205ENST00000460170 GORABQ5T7V8 394 aa18.25■□□□□ 0.51
PTPRU-205ENST00000460170 GNL2Q13823 731 aaKnown RBP18.24■□□□□ 0.51
PTPRU-205ENST00000460170 LAMC3Q9Y6N6 1575 aa18.24■□□□□ 0.51
PTPRU-205ENST00000460170 FAM69CQ0P6D2 419 aa18.24■□□□□ 0.51
PTPRU-205ENST00000460170 SLC12A5Q9H2X9 1139 aa18.24■□□□□ 0.51
PTPRU-205ENST00000460170 LNPKQ9C0E8 428 aa18.24■□□□□ 0.51
PTPRU-205ENST00000460170 TEFQ10587 303 aa18.23■□□□□ 0.51
PTPRU-205ENST00000460170 PDE3AQ14432 1141 aa18.23■□□□□ 0.51
PTPRU-205ENST00000460170 REC8O95072 547 aa18.23■□□□□ 0.51
PTPRU-205ENST00000460170 CSPP1Q1MSJ5 1256 aa18.23■□□□□ 0.51
PTPRU-205ENST00000460170 DDX49Q9Y6V7 483 aaKnown RBP18.23■□□□□ 0.51
PTPRU-205ENST00000460170 SKOR2Q2VWA4 1001 aaPredicted RBP18.22■□□□□ 0.51
PTPRU-205ENST00000460170 CHMP5Q9NZZ3 219 aa18.22■□□□□ 0.51
PTPRU-205ENST00000460170 FOXD4L5Q5VV16 416 aaPredicted RBP18.21■□□□□ 0.51
PTPRU-205ENST00000460170 FOXD4L4Q8WXT5 416 aaPredicted RBP18.21■□□□□ 0.51
PTPRU-205ENST00000460170 C1orf141Q5JVX7 400 aa18.2■□□□□ 0.5
PTPRU-205ENST00000460170 C22orf23Q9BZE7 217 aa18.2■□□□□ 0.5
PTPRU-205ENST00000460170 TAF7LQ5H9L4 462 aa18.2■□□□□ 0.5
PTPRU-205ENST00000460170 CAMSAP2Q08AD1 1489 aa18.2■□□□□ 0.5
PTPRU-205ENST00000460170 HSP90B1P14625 803 aaKnown RBP18.19■□□□□ 0.5
PTPRU-205ENST00000460170 MAGI1Q96QZ7 1491 aaPredicted RBP18.18■□□□□ 0.5
PTPRU-205ENST00000460170 ARHGEF11O15085 1522 aa18.18■□□□□ 0.5
PTPRU-205ENST00000460170 BCAR3O75815 825 aa18.18■□□□□ 0.5
PTPRU-205ENST00000460170 PHF14O94880 888 aa18.18■□□□□ 0.5
PTPRU-205ENST00000460170 EIF2S2P20042 333 aaKnown RBP18.18■□□□□ 0.5
PTPRU-205ENST00000460170 FKBP5Q13451 457 aaPredicted RBP18.18■□□□□ 0.5
PTPRU-205ENST00000460170 CCDC141Q6ZP82 1450 aa18.17■□□□□ 0.5
PTPRU-205ENST00000460170 EXOSC9Q06265 439 aaKnown RBP18.17■□□□□ 0.5
PTPRU-205ENST00000460170 NFKBIBQ15653 356 aa18.17■□□□□ 0.5
PTPRU-205ENST00000460170 PLB1Q6P1J6 1458 aa18.17■□□□□ 0.5
PTPRU-205ENST00000460170 NCOA1Q15788 1441 aa18.16■□□□□ 0.5
PTPRU-205ENST00000460170 PRAM1Q96QH2 718 aa18.16■□□□□ 0.5
PTPRU-205ENST00000460170 BACH2Q9BYV9 841 aa18.16■□□□□ 0.5
PTPRU-205ENST00000460170 TSPYL4Q9UJ04 414 aa18.16■□□□□ 0.5
PTPRU-205ENST00000460170 NECTIN2Q92692 538 aa18.16■□□□□ 0.5
PTPRU-205ENST00000460170 PRKAR2BP31323 418 aa18.15■□□□□ 0.5
PTPRU-205ENST00000460170 C9orf78Q9NZ63 289 aaPredicted RBP18.14■□□□□ 0.49
PTPRU-205ENST00000460170 INTS3Q68E01 1043 aaKnown RBP18.14■□□□□ 0.49
PTPRU-205ENST00000460170 DIAPH3Q9NSV4 1193 aa18.14■□□□□ 0.49
PTPRU-205ENST00000460170 RPRD2Q5VT52 1461 aaKnown RBP18.14■□□□□ 0.49
PTPRU-205ENST00000460170 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.13■□□□□ 0.49
PTPRU-205ENST00000460170 PDZRN3Q9UPQ7 1066 aa18.13■□□□□ 0.49
PTPRU-205ENST00000460170 WDR63Q8IWG1 891 aa18.13■□□□□ 0.49
PTPRU-205ENST00000460170 SLC52A1Q9NWF4 448 aa18.13■□□□□ 0.49
PTPRU-205ENST00000460170 ATP6V1DQ9Y5K8 247 aa18.13■□□□□ 0.49
PTPRU-205ENST00000460170 KIF3AQ9Y496 699 aa18.13■□□□□ 0.49
PTPRU-205ENST00000460170 URB2Q14146 1524 aaKnown RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms