RNA–Protein interactions for RNA: ENST00000454181.6

LYSMD2-202, Transcript of LysM domain containing 2, humanhuman

TSL 1 (best) BASIC

Gene LYSMD2, Length 1,228 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD2-202ENST00000454181 TET3O43151 1660 aa36.58■■■■□ 3.45
LYSMD2-202ENST00000454181 RBM33Q96EV2 1170 aaKnown RBP36.57■■■■□ 3.44
LYSMD2-202ENST00000454181 CHGAP10645 457 aaKnown RBP36.52■■■■□ 3.44
LYSMD2-202ENST00000454181 NKTRP30414 1462 aaKnown RBP36.5■■■■□ 3.43
LYSMD2-202ENST00000454181 MSH6P52701 1360 aa36.49■■■■□ 3.43
LYSMD2-202ENST00000454181 RIMS2Q9UQ26 1411 aa36.48■■■■□ 3.43
LYSMD2-202ENST00000454181 PLEKHG1Q9ULL1 1385 aa36.47■■■■□ 3.43
LYSMD2-202ENST00000454181 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.46■■■■□ 3.43
LYSMD2-202ENST00000454181 ZFYVE9O95405 1425 aa36.44■■■■□ 3.42
LYSMD2-202ENST00000454181 NWD1Q149M9 1564 aa36.43■■■■□ 3.42
LYSMD2-202ENST00000454181 ROCK1Q13464 1354 aa36.4■■■■□ 3.42
LYSMD2-202ENST00000454181 SLAIN2Q9P270 581 aa36.4■■■■□ 3.42
LYSMD2-202ENST00000454181 TBX22Q9Y458 520 aa36.4■■■■□ 3.42
LYSMD2-202ENST00000454181 UNC13BO14795 1591 aa36.39■■■■□ 3.42
LYSMD2-202ENST00000454181 GCC2Q8IWJ2 1684 aa36.39■■■■□ 3.42
LYSMD2-202ENST00000454181 ROBO1Q9Y6N7 1651 aa36.39■■■■□ 3.42
LYSMD2-202ENST00000454181 ITGAEP38570 1179 aa36.38■■■■□ 3.41
LYSMD2-202ENST00000454181 RGS17Q9UGC6 210 aaPredicted RBP36.38■■■■□ 3.41
LYSMD2-202ENST00000454181 TMEM131LA2VDJ0 1609 aa36.37■■■■□ 3.41
LYSMD2-202ENST00000454181 C14orf37Q86TY3 774 aa36.37■■■■□ 3.41
LYSMD2-202ENST00000454181 NUTM2DQ5VT03 806 aaPredicted RBP36.35■■■■□ 3.41
LYSMD2-202ENST00000454181 MYO5BQ9ULV0 1848 aa36.34■■■■□ 3.41
LYSMD2-202ENST00000454181 NUP155O75694 1391 aa36.33■■■■□ 3.41
LYSMD2-202ENST00000454181 CHD2O14647 1828 aaKnown RBP36.29■■■■□ 3.4
LYSMD2-202ENST00000454181 E9PCH4 1651 aa36.29■■■■□ 3.4
LYSMD2-202ENST00000454181 NCOA3Q9Y6Q9 1424 aa36.26■■■■□ 3.4
LYSMD2-202ENST00000454181 IQGAP3Q86VI3 1631 aa36.25■■■■□ 3.39
LYSMD2-202ENST00000454181 PIK3R4Q99570 1358 aa36.23■■■■□ 3.39
LYSMD2-202ENST00000454181 ATF3P18847 181 aa36.22■■■■□ 3.39
LYSMD2-202ENST00000454181 PPARGC1BQ86YN6 1023 aaKnown RBP36.22■■■■□ 3.39
LYSMD2-202ENST00000454181 JCADQ9P266 1359 aa36.22■■■■□ 3.39
LYSMD2-202ENST00000454181 ADAMTS13Q76LX8 1427 aa36.22■■■■□ 3.39
LYSMD2-202ENST00000454181 POTEAQ6S8J7 498 aa36.21■■■■□ 3.39
LYSMD2-202ENST00000454181 CADPS2Q86UW7 1296 aa36.21■■■■□ 3.39
LYSMD2-202ENST00000454181 C19orf44Q9H6X5 657 aa36.21■■■■□ 3.39
LYSMD2-202ENST00000454181 PHLPP1O60346 1717 aa36.19■■■■□ 3.38
LYSMD2-202ENST00000454181 DIP2AQ14689 1571 aa36.19■■■■□ 3.38
LYSMD2-202ENST00000454181 AMOTL2Q9Y2J4 779 aa36.17■■■■□ 3.38
LYSMD2-202ENST00000454181 ZNF326Q5BKZ1 582 aaKnown RBP36.14■■■■□ 3.38
LYSMD2-202ENST00000454181 TRPM2O94759 1503 aa36.12■■■■□ 3.37
LYSMD2-202ENST00000454181 MEX3CQ5U5Q3 659 aaKnown RBP36.07■■■■□ 3.36
LYSMD2-202ENST00000454181 SPATA31A6Q5VVP1 1343 aa36.06■■■■□ 3.36
LYSMD2-202ENST00000454181 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.05■■■■□ 3.36
LYSMD2-202ENST00000454181 PTPRUQ92729 1446 aa36.02■■■■□ 3.36
LYSMD2-202ENST00000454181 COL16A1Q07092 1604 aaPredicted RBP36.02■■■■□ 3.36
LYSMD2-202ENST00000454181 SPHKAPQ2M3C7 1700 aa35.98■■■■□ 3.35
LYSMD2-202ENST00000454181 BRINP3Q76B58 766 aa35.97■■■■□ 3.35
LYSMD2-202ENST00000454181 AHDC1Q5TGY3 1603 aaPredicted RBP35.95■■■■□ 3.35
LYSMD2-202ENST00000454181 ZNF772Q68DY9 489 aaPredicted RBP35.95■■■■□ 3.35
LYSMD2-202ENST00000454181 SETBP1Q9Y6X0 1596 aa35.94■■■■□ 3.34
LYSMD2-202ENST00000454181 DCCP43146 1447 aa35.94■■■■□ 3.34
LYSMD2-202ENST00000454181 METP08581 1390 aa35.9■■■■□ 3.34
LYSMD2-202ENST00000454181 LRP6O75581 1613 aa35.9■■■■□ 3.34
LYSMD2-202ENST00000454181 NRXN3Q9Y4C0 1643 aa35.88■■■■□ 3.33
LYSMD2-202ENST00000454181 NUTM2BA6NNL0 878 aaPredicted RBP35.88■■■■□ 3.33
LYSMD2-202ENST00000454181 NUTM2EB1AL46 878 aaPredicted RBP35.88■■■■□ 3.33
LYSMD2-202ENST00000454181 NUTM2AQ8IVF1 878 aaPredicted RBP35.88■■■■□ 3.33
LYSMD2-202ENST00000454181 XRN1Q8IZH2 1706 aaKnown RBP35.86■■■■□ 3.33
LYSMD2-202ENST00000454181 TRIM52Q96A61 297 aa35.86■■■■□ 3.33
LYSMD2-202ENST00000454181 SHPRHQ149N8 1683 aa35.84■■■■□ 3.33
LYSMD2-202ENST00000454181 RRBP1Q9P2E9 1410 aaKnown RBP35.83■■■■□ 3.33
LYSMD2-202ENST00000454181 NAIPQ13075 1403 aa35.83■■■■□ 3.33
LYSMD2-202ENST00000454181 CLTCL1P53675 1640 aa35.82■■■■□ 3.32
LYSMD2-202ENST00000454181 ASXL1Q8IXJ9 1541 aa35.82■■■■□ 3.32
LYSMD2-202ENST00000454181 MST1RQ04912 1400 aa35.82■■■■□ 3.32
LYSMD2-202ENST00000454181 VGFO15240 615 aaPredicted RBP35.81■■■■□ 3.32
LYSMD2-202ENST00000454181 LRRC59Q96AG4 307 aaKnown RBP35.81■■■■□ 3.32
LYSMD2-202ENST00000454181 NEXMIFQ5QGS0 1516 aa35.79■■■■□ 3.32
LYSMD2-202ENST00000454181 ADGRL3Q9HAR2 1447 aa35.79■■■■□ 3.32
LYSMD2-202ENST00000454181 SETD5Q9C0A6 1442 aa35.76■■■■□ 3.32
LYSMD2-202ENST00000454181 RXRBP28702 533 aa35.76■■■■□ 3.32
LYSMD2-202ENST00000454181 SETD1AO15047 1707 aaKnown RBP35.76■■■■□ 3.31
LYSMD2-202ENST00000454181 KIF1BO60333 1816 aa35.75■■■■□ 3.31
LYSMD2-202ENST00000454181 SLC4A1APQ9BWU0 796 aaKnown RBP35.74■■■■□ 3.31
LYSMD2-202ENST00000454181 RPGRIP1LQ68CZ1 1315 aa35.71■■■■□ 3.31
LYSMD2-202ENST00000454181 DDX17Q92841 729 aaKnown RBP35.7■■■■□ 3.31
LYSMD2-202ENST00000454181 AFF2P51816 1311 aa35.69■■■■□ 3.3
LYSMD2-202ENST00000454181 NHSL1Q5SYE7 1610 aa35.67■■■■□ 3.3
LYSMD2-202ENST00000454181 HFM1A2PYH4 1435 aa35.66■■■■□ 3.3
LYSMD2-202ENST00000454181 C8orf37Q96NL8 207 aa35.64■■■■□ 3.3
LYSMD2-202ENST00000454181 UPF1Q92900 1129 aaKnown RBP eCLIP35.63■■■■□ 3.29
LYSMD2-202ENST00000454181 PTCH1Q13635 1447 aa35.63■■■■□ 3.29
LYSMD2-202ENST00000454181 NALCNQ8IZF0 1738 aa35.63■■■■□ 3.29
LYSMD2-202ENST00000454181 C1orf167Q5SNV9 1468 aa35.62■■■■□ 3.29
LYSMD2-202ENST00000454181 PNPLA6Q8IY17 1366 aa35.61■■■■□ 3.29
LYSMD2-202ENST00000454181 ROBO2Q9HCK4 1378 aa35.61■■■■□ 3.29
LYSMD2-202ENST00000454181 ORAI2Q96SN7 254 aa35.56■■■■□ 3.28
LYSMD2-202ENST00000454181 QTRT2Q9H974 415 aaKnown RBP35.56■■■■□ 3.28
LYSMD2-202ENST00000454181 CDK12Q9NYV4 1490 aaPredicted RBP35.55■■■■□ 3.28
LYSMD2-202ENST00000454181 ADAMTS2O95450 1211 aa35.55■■■■□ 3.28
LYSMD2-202ENST00000454181 NGLY1Q96IV0 654 aa35.55■■■■□ 3.28
LYSMD2-202ENST00000454181 RBM6P78332 1123 aaKnown RBP35.52■■■■□ 3.28
LYSMD2-202ENST00000454181 FOXD1Q16676 465 aa35.52■■■■□ 3.28
LYSMD2-202ENST00000454181 SOS2Q07890 1332 aaPredicted RBP35.5■■■■□ 3.27
LYSMD2-202ENST00000454181 PRAG1Q86YV5 1406 aa35.49■■■■□ 3.27
LYSMD2-202ENST00000454181 RGL3Q3MIN7 710 aa35.48■■■■□ 3.27
LYSMD2-202ENST00000454181 CCDC144AA2RUR9 1427 aa35.47■■■■□ 3.27
LYSMD2-202ENST00000454181 ESCO1Q5FWF5 840 aa35.45■■■■□ 3.27
LYSMD2-202ENST00000454181 PPLO60437 1756 aa35.45■■■■□ 3.27
LYSMD2-202ENST00000454181 STK26Q9P289 416 aa35.43■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms