RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 TMEM131LA2VDJ0 1609 aa19.51■□□□□ 0.71
CHD3-206ENST00000452447 RIMS2Q9UQ26 1411 aa19.48■□□□□ 0.71
CHD3-206ENST00000452447 KCNA6P17658 529 aa19.48■□□□□ 0.71
CHD3-206ENST00000452447 HSPA1LP34931 641 aa19.48■□□□□ 0.71
CHD3-206ENST00000452447 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.48■□□□□ 0.71
CHD3-206ENST00000452447 SENP3Q9H4L4 574 aaPredicted RBP19.48■□□□□ 0.71
CHD3-206ENST00000452447 ZFYVE9O95405 1425 aa19.48■□□□□ 0.71
CHD3-206ENST00000452447 PLEKHG1Q9ULL1 1385 aa19.46■□□□□ 0.71
CHD3-206ENST00000452447 NAIPQ13075 1403 aa19.46■□□□□ 0.7
CHD3-206ENST00000452447 XIRP1Q702N8 1843 aaKnown RBP19.44■□□□□ 0.7
CHD3-206ENST00000452447 PROSER2Q86WR7 435 aaPredicted RBP19.44■□□□□ 0.7
CHD3-206ENST00000452447 ALKQ9UM73 1620 aa19.44■□□□□ 0.7
CHD3-206ENST00000452447 NUTM2DQ5VT03 806 aaPredicted RBP19.43■□□□□ 0.7
CHD3-206ENST00000452447 SPHKAPQ2M3C7 1700 aa19.43■□□□□ 0.7
CHD3-206ENST00000452447 TMEM94Q12767 1356 aa19.42■□□□□ 0.7
CHD3-206ENST00000452447 TRIM52Q96A61 297 aa19.41■□□□□ 0.7
CHD3-206ENST00000452447 HFM1A2PYH4 1435 aa19.4■□□□□ 0.7
CHD3-206ENST00000452447 NKTRP30414 1462 aaKnown RBP19.39■□□□□ 0.69
CHD3-206ENST00000452447 TBX22Q9Y458 520 aa19.39■□□□□ 0.69
CHD3-206ENST00000452447 CHD2O14647 1828 aaKnown RBP19.39■□□□□ 0.69
CHD3-206ENST00000452447 RBM33Q96EV2 1170 aaKnown RBP19.38■□□□□ 0.69
CHD3-206ENST00000452447 NWD1Q149M9 1564 aa19.38■□□□□ 0.69
CHD3-206ENST00000452447 ZNF326Q5BKZ1 582 aaKnown RBP19.37■□□□□ 0.69
CHD3-206ENST00000452447 ILDR2Q71H61 639 aa19.35■□□□□ 0.69
CHD3-206ENST00000452447 SLC4A1APQ9BWU0 796 aaKnown RBP19.34■□□□□ 0.69
CHD3-206ENST00000452447 DIP2AQ14689 1571 aa19.33■□□□□ 0.69
CHD3-206ENST00000452447 ADAMTS13Q76LX8 1427 aa19.33■□□□□ 0.69
CHD3-206ENST00000452447 MSH6P52701 1360 aa19.33■□□□□ 0.68
CHD3-206ENST00000452447 TRPM2O94759 1503 aa19.32■□□□□ 0.68
CHD3-206ENST00000452447 KIF1BO60333 1816 aa19.32■□□□□ 0.68
CHD3-206ENST00000452447 PIK3R4Q99570 1358 aa19.31■□□□□ 0.68
CHD3-206ENST00000452447 CLTCL1P53675 1640 aa19.31■□□□□ 0.68
CHD3-206ENST00000452447 C14orf37Q86TY3 774 aa19.3■□□□□ 0.68
CHD3-206ENST00000452447 FAM135BQ49AJ0 1406 aa19.3■□□□□ 0.68
CHD3-206ENST00000452447 MED1Q15648 1581 aaPredicted RBP19.28■□□□□ 0.68
CHD3-206ENST00000452447 AMOTL2Q9Y2J4 779 aa19.27■□□□□ 0.68
CHD3-206ENST00000452447 SLAIN2Q9P270 581 aa19.27■□□□□ 0.67
CHD3-206ENST00000452447 NCOA3Q9Y6Q9 1424 aa19.26■□□□□ 0.67
CHD3-206ENST00000452447 SETBP1Q9Y6X0 1596 aa19.25■□□□□ 0.67
CHD3-206ENST00000452447 ROBO1Q9Y6N7 1651 aa19.25■□□□□ 0.67
CHD3-206ENST00000452447 PHF23Q9BUL5 403 aaPredicted RBP19.24■□□□□ 0.67
CHD3-206ENST00000452447 NEXMIFQ5QGS0 1516 aa19.24■□□□□ 0.67
CHD3-206ENST00000452447 NRXN3Q9Y4C0 1643 aa19.24■□□□□ 0.67
CHD3-206ENST00000452447 C19orf44Q9H6X5 657 aa19.23■□□□□ 0.67
CHD3-206ENST00000452447 PTPRUQ92729 1446 aa19.22■□□□□ 0.67
CHD3-206ENST00000452447 SOCS7O14512 581 aa19.22■□□□□ 0.67
CHD3-206ENST00000452447 VGFO15240 615 aaPredicted RBP19.22■□□□□ 0.67
CHD3-206ENST00000452447 FOXD1Q16676 465 aa19.22■□□□□ 0.67
CHD3-206ENST00000452447 ATF3P18847 181 aa19.21■□□□□ 0.67
CHD3-206ENST00000452447 CADPS2Q86UW7 1296 aa19.21■□□□□ 0.67
CHD3-206ENST00000452447 MPHOSPH9Q99550 1183 aa19.2■□□□□ 0.66
CHD3-206ENST00000452447 METP08581 1390 aa19.19■□□□□ 0.66
CHD3-206ENST00000452447 RPGRIP1LQ68CZ1 1315 aa19.19■□□□□ 0.66
CHD3-206ENST00000452447 ACIN1Q9UKV3 1341 aaKnown RBP19.19■□□□□ 0.66
CHD3-206ENST00000452447 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.19■□□□□ 0.66
CHD3-206ENST00000452447 XRN1Q8IZH2 1706 aaKnown RBP19.18■□□□□ 0.66
CHD3-206ENST00000452447 CCDC144AA2RUR9 1427 aa19.17■□□□□ 0.66
CHD3-206ENST00000452447 PHLPP1O60346 1717 aa19.15■□□□□ 0.66
CHD3-206ENST00000452447 SETD5Q9C0A6 1442 aa19.15■□□□□ 0.66
CHD3-206ENST00000452447 PPLO60437 1756 aa19.14■□□□□ 0.65
CHD3-206ENST00000452447 DCCP43146 1447 aa19.12■□□□□ 0.65
CHD3-206ENST00000452447 RGL3Q3MIN7 710 aa19.11■□□□□ 0.65
CHD3-206ENST00000452447 JCADQ9P266 1359 aa19.09■□□□□ 0.65
CHD3-206ENST00000452447 SETD1AO15047 1707 aaKnown RBP19.08■□□□□ 0.65
CHD3-206ENST00000452447 RAB3GAP2Q9H2M9 1393 aa19.07■□□□□ 0.64
CHD3-206ENST00000452447 BRINP3Q76B58 766 aa19.07■□□□□ 0.64
CHD3-206ENST00000452447 ADGRL3Q9HAR2 1447 aa19.07■□□□□ 0.64
CHD3-206ENST00000452447 SPATA31E1Q6ZUB1 1445 aa19.06■□□□□ 0.64
CHD3-206ENST00000452447 COL16A1Q07092 1604 aaPredicted RBP19.06■□□□□ 0.64
CHD3-206ENST00000452447 ANKRD30BQ9BXX2 1392 aa19.06■□□□□ 0.64
CHD3-206ENST00000452447 PTCH1Q13635 1447 aa19.06■□□□□ 0.64
CHD3-206ENST00000452447 ADGRF5Q8IZF2 1346 aa19.05■□□□□ 0.64
CHD3-206ENST00000452447 NALCNQ8IZF0 1738 aa19.05■□□□□ 0.64
CHD3-206ENST00000452447 AHDC1Q5TGY3 1603 aaPredicted RBP19.04■□□□□ 0.64
CHD3-206ENST00000452447 MST1RQ04912 1400 aa19.04■□□□□ 0.64
CHD3-206ENST00000452447 ROBO2Q9HCK4 1378 aa19.04■□□□□ 0.64
CHD3-206ENST00000452447 RGS17Q9UGC6 210 aaPredicted RBP19.03■□□□□ 0.64
CHD3-206ENST00000452447 IFT172Q9UG01 1749 aa19.02■□□□□ 0.64
CHD3-206ENST00000452447 ASXL1Q8IXJ9 1541 aa19.01■□□□□ 0.63
CHD3-206ENST00000452447 PRAG1Q86YV5 1406 aa19.01■□□□□ 0.63
CHD3-206ENST00000452447 SPATA31A6Q5VVP1 1343 aa19■□□□□ 0.63
CHD3-206ENST00000452447 STK26Q9P289 416 aa18.98■□□□□ 0.63
CHD3-206ENST00000452447 PIK3C2GO75747 1445 aa18.97■□□□□ 0.63
CHD3-206ENST00000452447 MEX3CQ5U5Q3 659 aaKnown RBP18.97■□□□□ 0.63
CHD3-206ENST00000452447 SHPRHQ149N8 1683 aa18.97■□□□□ 0.63
CHD3-206ENST00000452447 NHSL1Q5SYE7 1610 aa18.96■□□□□ 0.63
CHD3-206ENST00000452447 TMEM132EQ6IEE7 984 aa18.96■□□□□ 0.63
CHD3-206ENST00000452447 LRRC59Q96AG4 307 aaKnown RBP18.96■□□□□ 0.63
CHD3-206ENST00000452447 C1orf167Q5SNV9 1468 aa18.96■□□□□ 0.63
CHD3-206ENST00000452447 HRCP23327 699 aa18.95■□□□□ 0.62
CHD3-206ENST00000452447 POTEAQ6S8J7 498 aa18.94■□□□□ 0.62
CHD3-206ENST00000452447 DDX17Q92841 729 aaKnown RBP18.94■□□□□ 0.62
CHD3-206ENST00000452447 LRPPRCP42704 1394 aaKnown RBP18.94■□□□□ 0.62
CHD3-206ENST00000452447 ABCC11Q96J66 1382 aa18.93■□□□□ 0.62
CHD3-206ENST00000452447 WAPLQ7Z5K2 1190 aa18.93■□□□□ 0.62
CHD3-206ENST00000452447 ORAI2Q96SN7 254 aa18.93■□□□□ 0.62
CHD3-206ENST00000452447 TECPR2O15040 1411 aa18.93■□□□□ 0.62
CHD3-206ENST00000452447 NUTM2BA6NNL0 878 aaPredicted RBP18.92■□□□□ 0.62
CHD3-206ENST00000452447 NUTM2EB1AL46 878 aaPredicted RBP18.92■□□□□ 0.62
CHD3-206ENST00000452447 NUTM2AQ8IVF1 878 aaPredicted RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms