RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CWC22Q9HCG8 908 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 GPHNQ9NQX3 736 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 UNCXA6NJT0 531 aa3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 LMOD1P29536 600 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 DIXDC1Q155Q3 683 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 TSR1Q2NL82 804 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 BCL2L13Q9BXK5 485 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 CSPP1Q1MSJ5 1256 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 IFNL1Q8IU54 200 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 ANKRD13AQ8IZ07 590 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 MS4A3Q96HJ5 214 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 TBC1D2BQ9UPU7 963 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 SREK1Q8WXA9 508 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 UPF1Q92900 1129 aaKnown RBP eCLIP3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 METRNQ9UJH8 293 aa3.37□□□□□ -1.87
CCDC88A-208ENST00000444458 AP1G2O75843 785 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 TCF3P15923 654 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 MYSM1Q5VVJ2 828 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 OXER1Q8TDS5 423 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 RBM47A0AV96 593 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 DSG2Q14126 1118 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 MS4A4AQ96JQ5 239 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 ERCC3P19447 782 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 GIPC2Q8TF65 315 aa3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 BIN2Q9UBW5 565 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-208ENST00000444458 ANKRD62A6NC57 917 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 ZNF326Q5BKZ1 582 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 MTMR14Q8NCE2 650 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 FBXO41Q8TF61 875 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 PHF12Q96QT6 1004 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 PPP1R12CQ9BZL4 782 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 ZRANB1Q9UGI0 708 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 COLQQ9Y215 455 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 NUTM2BA6NNL0 878 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 NUTM2EB1AL46 878 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 OSBPP22059 807 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 WASHC4Q2M389 1173 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 NUTM2DQ5VT03 806 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 NUTM2AQ8IVF1 878 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 SPATA32Q96LK8 384 aa3.35□□□□□ -1.87
CCDC88A-208ENST00000444458 PTGDRQ13258 359 aa3.34□□□□□ -1.87
CCDC88A-208ENST00000444458 NOL8Q76FK4 1167 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-208ENST00000444458 TBC1D2Q9BYX2 928 aa3.34□□□□□ -1.87
CCDC88A-208ENST00000444458 TRPC6Q9Y210 931 aa3.34□□□□□ -1.87
CCDC88A-208ENST00000444458 SF3A1Q15459 793 aaKnown RBP3.34□□□□□ -1.88
CCDC88A-208ENST00000444458 PLPP6Q8IY26 295 aa3.34□□□□□ -1.88
CCDC88A-208ENST00000444458 MAP3K13O43283 966 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 PSMD1Q99460 953 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 PALM3A6NDB9 673 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 TTLL13PA6NNM8 815 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 G3V3G9 751 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 CFAP70Q5T0N1 1121 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 PDCD7Q8N8D1 485 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 UBXN4Q92575 508 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 FAM217BQ9NTX9 383 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 NDUFB9Q9Y6M9 179 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 KDM4FA0A1W2PPD8 638 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 ST18O60284 1047 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 NLRP7Q8WX94 980 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 SIRT1Q96EB6 747 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 KIAA1522Q9P206 1035 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 ZNF16P17020 682 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 ZC3H6P61129 1189 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 NUTM1Q86Y26 1132 aa3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 ZNF526Q8TF50 670 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-208ENST00000444458 MAP3K7O43318 606 aa3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 RIC3Q7Z5B4 369 aa3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 MARSP56192 900 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 VAC14Q08AM6 782 aa3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 ZNF710Q8N1W2 664 aa3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 TFIP11Q9UBB9 837 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 LIMD1Q9UGP4 676 aa3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 GNEQ9Y223 722 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-208ENST00000444458 ATG7O95352 703 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 FOXK1P85037 733 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 TSC1Q92574 1164 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 TMEM106CQ9BVX2 250 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 USP17L8P0C7I0 530 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 HOXB3P14651 431 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 SEMA3FQ13275 785 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 NAALADL2Q58DX5 795 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.31□□□□□ -1.885e-7■■■■□ 21.7
CCDC88A-208ENST00000444458 OATP04181 439 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 ARID4AP29374 1257 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 SCUBE2Q9NQ36 999 aa3.31□□□□□ -1.88
CCDC88A-208ENST00000444458 KDM4AO75164 1064 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 PPP2R2DQ66LE6 453 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 RBM33Q96EV2 1170 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 C8orf37Q96NL8 207 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 TMUB1Q9BVT8 246 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 FAM161AQ3B820 660 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 CERS3Q8IU89 383 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 ERCC5P28715 1186 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 TSNAXIP1Q2TAA8 658 aa3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 HIRIP3Q9BW71 556 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-208ENST00000444458 TMEM88BA6NKF7 163 aa3.29□□□□□ -1.88
CCDC88A-208ENST00000444458 ADAMTS19Q8TE59 1207 aa3.29□□□□□ -1.88
CCDC88A-208ENST00000444458 ZNF592Q92610 1267 aa3.29□□□□□ -1.88
CCDC88A-208ENST00000444458 TXNDC2Q86VQ3 553 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms