RNA–Protein interactions for RNA: ENST00000429738.1

MRPL28-203, Transcript of mitochondrial ribosomal protein L28, human

TSL 2 BASIC

Gene MRPL28, Length 310 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL28-203	ENST00000429738	SLC52A1	Q9NWF4	448 aa		27.2	■■□□□ 1.94
MRPL28-203	ENST00000429738	GCC2	Q8IWJ2	1684 aa		27.18	■■□□□ 1.94
MRPL28-203	ENST00000429738	RBM33	Q96EV2	1170 aa	Known RBP	27.16	■■□□□ 1.94
MRPL28-203	ENST00000429738	BCAN	Q96GW7	911 aa		27.14	■■□□□ 1.94
MRPL28-203	ENST00000429738	IQGAP3	Q86VI3	1631 aa		27.14	■■□□□ 1.94
MRPL28-203	ENST00000429738	ADGRB3	O60242	1522 aa		27.14	■■□□□ 1.94
MRPL28-203	ENST00000429738	RRBP1	Q9P2E9	1410 aa	Known RBP	27.14	■■□□□ 1.93
MRPL28-203	ENST00000429738		E9PCH4	1651 aa		27.11	■■□□□ 1.93
MRPL28-203	ENST00000429738	ROBO1	Q9Y6N7	1651 aa		27.11	■■□□□ 1.93
MRPL28-203	ENST00000429738	ITGAE	P38570	1179 aa		27.1	■■□□□ 1.93
MRPL28-203	ENST00000429738	POTEA	Q6S8J7	498 aa		27.1	■■□□□ 1.93
MRPL28-203	ENST00000429738	NKTR	P30414	1462 aa	Known RBP	27.1	■■□□□ 1.93
MRPL28-203	ENST00000429738	SLAIN2	Q9P270	581 aa		27.08	■■□□□ 1.93
MRPL28-203	ENST00000429738	MSH6	P52701	1360 aa		27.08	■■□□□ 1.93
MRPL28-203	ENST00000429738	NWD1	Q149M9	1564 aa		27.07	■■□□□ 1.92
MRPL28-203	ENST00000429738	HDGF	P51858	240 aa	Known RBP	27.07	■■□□□ 1.92
MRPL28-203	ENST00000429738	MYO5B	Q9ULV0	1848 aa		27.05	■■□□□ 1.92
MRPL28-203	ENST00000429738	TMEM131L	A2VDJ0	1609 aa		27.03	■■□□□ 1.92
MRPL28-203	ENST00000429738	NUP155	O75694	1391 aa		27.03	■■□□□ 1.92
MRPL28-203	ENST00000429738	ZFYVE9	O95405	1425 aa		27.03	■■□□□ 1.92
MRPL28-203	ENST00000429738	PLEKHG1	Q9ULL1	1385 aa		27.03	■■□□□ 1.92
MRPL28-203	ENST00000429738	PPP1R15A	O75807	674 aa	Predicted RBP	27.02	■■□□□ 1.92
MRPL28-203	ENST00000429738	RIMS2	Q9UQ26	1411 aa		27	■■□□□ 1.91
MRPL28-203	ENST00000429738	TBX22	Q9Y458	520 aa		27	■■□□□ 1.91
MRPL28-203	ENST00000429738	CHD2	O14647	1828 aa	Known RBP	27	■■□□□ 1.91
MRPL28-203	ENST00000429738	JCAD	Q9P266	1359 aa		26.97	■■□□□ 1.91
MRPL28-203	ENST00000429738	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	26.97	■■□□□ 1.91
MRPL28-203	ENST00000429738	NAIP	Q13075	1403 aa		26.95	■■□□□ 1.9
MRPL28-203	ENST00000429738	NCOA3	Q9Y6Q9	1424 aa		26.95	■■□□□ 1.9
MRPL28-203	ENST00000429738	PHLPP1	O60346	1717 aa		26.95	■■□□□ 1.9
MRPL28-203	ENST00000429738	CHGA	P10645	457 aa	Known RBP	26.93	■■□□□ 1.9
MRPL28-203	ENST00000429738	SPHKAP	Q2M3C7	1700 aa		26.9	■■□□□ 1.9
MRPL28-203	ENST00000429738	C14orf37	Q86TY3	774 aa		26.9	■■□□□ 1.9
MRPL28-203	ENST00000429738	NUTM2D	Q5VT03	806 aa	Predicted RBP	26.88	■■□□□ 1.89
MRPL28-203	ENST00000429738	CADPS2	Q86UW7	1296 aa		26.88	■■□□□ 1.89
MRPL28-203	ENST00000429738	C19orf44	Q9H6X5	657 aa		26.88	■■□□□ 1.89
MRPL28-203	ENST00000429738	HFM1	A2PYH4	1435 aa		26.87	■■□□□ 1.89
MRPL28-203	ENST00000429738	ADAMTS13	Q76LX8	1427 aa		26.87	■■□□□ 1.89
MRPL28-203	ENST00000429738	PIK3R4	Q99570	1358 aa		26.86	■■□□□ 1.89
MRPL28-203	ENST00000429738	COL16A1	Q07092	1604 aa	Predicted RBP	26.86	■■□□□ 1.89
MRPL28-203	ENST00000429738	ATF3	P18847	181 aa		26.85	■■□□□ 1.89
MRPL28-203	ENST00000429738	SPATA31A6	Q5VVP1	1343 aa		26.85	■■□□□ 1.89
MRPL28-203	ENST00000429738	DIP2A	Q14689	1571 aa		26.81	■■□□□ 1.88
MRPL28-203	ENST00000429738	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	26.81	■■□□□ 1.88
MRPL28-203	ENST00000429738	MEX3C	Q5U5Q3	659 aa	Known RBP	26.8	■■□□□ 1.88
MRPL28-203	ENST00000429738	ZNF772	Q68DY9	489 aa	Predicted RBP	26.8	■■□□□ 1.88
MRPL28-203	ENST00000429738	AMOTL2	Q9Y2J4	779 aa		26.8	■■□□□ 1.88
MRPL28-203	ENST00000429738	TRPM2	O94759	1503 aa		26.78	■■□□□ 1.88
MRPL28-203	ENST00000429738	LRP6	O75581	1613 aa		26.78	■■□□□ 1.88
MRPL28-203	ENST00000429738	SETD1A	O15047	1707 aa	Known RBP	26.77	■■□□□ 1.88
MRPL28-203	ENST00000429738	AHDC1	Q5TGY3	1603 aa	Predicted RBP	26.76	■■□□□ 1.87
MRPL28-203	ENST00000429738	CLTCL1	P53675	1640 aa		26.76	■■□□□ 1.87
MRPL28-203	ENST00000429738	BRINP3	Q76B58	766 aa		26.74	■■□□□ 1.87
MRPL28-203	ENST00000429738	PTPRU	Q92729	1446 aa		26.73	■■□□□ 1.87
MRPL28-203	ENST00000429738	SHPRH	Q149N8	1683 aa		26.71	■■□□□ 1.87
MRPL28-203	ENST00000429738	NRXN3	Q9Y4C0	1643 aa		26.71	■■□□□ 1.87
MRPL28-203	ENST00000429738	TRIM52	Q96A61	297 aa		26.7	■■□□□ 1.86
MRPL28-203	ENST00000429738	KIF1B	O60333	1816 aa		26.69	■■□□□ 1.86
MRPL28-203	ENST00000429738	UPF1	Q92900	1129 aa	Known RBP eCLIP	26.69	■■□□□ 1.86	3e-25	■■■■■ 56.4
MRPL28-203	ENST00000429738	SETBP1	Q9Y6X0	1596 aa		26.69	■■□□□ 1.86
MRPL28-203	ENST00000429738	DCC	P43146	1447 aa		26.67	■■□□□ 1.86
MRPL28-203	ENST00000429738	NEXMIF	Q5QGS0	1516 aa		26.67	■■□□□ 1.86
MRPL28-203	ENST00000429738	RXRB	P28702	533 aa		26.67	■■□□□ 1.86
MRPL28-203	ENST00000429738	NUTM2B	A6NNL0	878 aa	Predicted RBP	26.66	■■□□□ 1.86
MRPL28-203	ENST00000429738	NUTM2E	B1AL46	878 aa	Predicted RBP	26.66	■■□□□ 1.86
MRPL28-203	ENST00000429738	NUTM2A	Q8IVF1	878 aa	Predicted RBP	26.66	■■□□□ 1.86
MRPL28-203	ENST00000429738	ZNF326	Q5BKZ1	582 aa	Known RBP	26.64	■■□□□ 1.86
MRPL28-203	ENST00000429738	SLC4A1AP	Q9BWU0	796 aa	Known RBP	26.64	■■□□□ 1.86
MRPL28-203	ENST00000429738	SETD5	Q9C0A6	1442 aa		26.62	■■□□□ 1.85
MRPL28-203	ENST00000429738	LRRC59	Q96AG4	307 aa	Known RBP	26.61	■■□□□ 1.85
MRPL28-203	ENST00000429738	XRN1	Q8IZH2	1706 aa	Known RBP	26.61	■■□□□ 1.85
MRPL28-203	ENST00000429738	ASXL1	Q8IXJ9	1541 aa		26.6	■■□□□ 1.85
MRPL28-203	ENST00000429738	MST1R	Q04912	1400 aa		26.6	■■□□□ 1.85
MRPL28-203	ENST00000429738	MET	P08581	1390 aa		26.59	■■□□□ 1.85
MRPL28-203	ENST00000429738	AFF2	P51816	1311 aa		26.58	■■□□□ 1.85
MRPL28-203	ENST00000429738	CDK12	Q9NYV4	1490 aa	Predicted RBP	26.56	■■□□□ 1.84
MRPL28-203	ENST00000429738	NHSL1	Q5SYE7	1610 aa		26.54	■■□□□ 1.84
MRPL28-203	ENST00000429738	ADGRL3	Q9HAR2	1447 aa		26.53	■■□□□ 1.84
MRPL28-203	ENST00000429738	PPL	O60437	1756 aa		26.52	■■□□□ 1.84
MRPL28-203	ENST00000429738	DDX17	Q92841	729 aa	Known RBP	26.52	■■□□□ 1.84
MRPL28-203	ENST00000429738	RPGRIP1L	Q68CZ1	1315 aa		26.51	■■□□□ 1.83
MRPL28-203	ENST00000429738	FOXD1	Q16676	465 aa		26.51	■■□□□ 1.83
MRPL28-203	ENST00000429738	QTRT2	Q9H974	415 aa	Known RBP	26.51	■■□□□ 1.83
MRPL28-203	ENST00000429738	C8orf37	Q96NL8	207 aa		26.5	■■□□□ 1.83
MRPL28-203	ENST00000429738	PNPLA6	Q8IY17	1366 aa		26.49	■■□□□ 1.83
MRPL28-203	ENST00000429738	MPHOSPH9	Q99550	1183 aa		26.49	■■□□□ 1.83
MRPL28-203	ENST00000429738	VGF	O15240	615 aa	Predicted RBP	26.48	■■□□□ 1.83
MRPL28-203	ENST00000429738	RBM6	P78332	1123 aa	Known RBP	26.48	■■□□□ 1.83
MRPL28-203	ENST00000429738	ACIN1	Q9UKV3	1341 aa	Known RBP	26.46	■■□□□ 1.83
MRPL28-203	ENST00000429738	CCDC144A	A2RUR9	1427 aa		26.45	■■□□□ 1.82
MRPL28-203	ENST00000429738	C1orf167	Q5SNV9	1468 aa		26.43	■■□□□ 1.82
MRPL28-203	ENST00000429738	NALCN	Q8IZF0	1738 aa		26.43	■■□□□ 1.82
MRPL28-203	ENST00000429738	SPATA31E1	Q6ZUB1	1445 aa		26.43	■■□□□ 1.82
MRPL28-203	ENST00000429738	NGLY1	Q96IV0	654 aa		26.43	■■□□□ 1.82
MRPL28-203	ENST00000429738	PRAG1	Q86YV5	1406 aa		26.41	■■□□□ 1.82
MRPL28-203	ENST00000429738	ADAMTS2	O95450	1211 aa		26.41	■■□□□ 1.82
MRPL28-203	ENST00000429738	IFT172	Q9UG01	1749 aa		26.4	■■□□□ 1.82
MRPL28-203	ENST00000429738	SOS2	Q07890	1332 aa	Predicted RBP	26.39	■■□□□ 1.82
MRPL28-203	ENST00000429738	RGS12	O14924	1447 aa		26.39	■■□□□ 1.82
MRPL28-203	ENST00000429738	PTCH1	Q13635	1447 aa		26.39	■■□□□ 1.82

Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms