RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NCLP19338 710 aaKnown RBP15.19■□□□□ 0.02
HMGB1-206ENST00000405805 PPP2R1AP30153 589 aa15.19■□□□□ 0.02
HMGB1-206ENST00000405805 MLECQ14165 292 aa15.17■□□□□ 0.02
HMGB1-206ENST00000405805 ITPRIPQ8IWB1 547 aa15.17■□□□□ 0.02
HMGB1-206ENST00000405805 APBB1O00213 710 aa15.16■□□□□ 0.02
HMGB1-206ENST00000405805 DHX29Q7Z478 1369 aaKnown RBP15.15■□□□□ 0.02
HMGB1-206ENST00000405805 ELL2O00472 640 aaPredicted RBP15.14■□□□□ 0.01
HMGB1-206ENST00000405805 MAPK8IP3Q9UPT6 1336 aa15.14■□□□□ 0.01
HMGB1-206ENST00000405805 SRPK2P78362 688 aaKnown RBP15.14■□□□□ 0.01
HMGB1-206ENST00000405805 CFAP70Q5T0N1 1121 aa15.14■□□□□ 0.01
HMGB1-206ENST00000405805 L1TD1Q5T7N2 865 aaKnown RBP15.14■□□□□ 0.01
HMGB1-206ENST00000405805 PZPP20742 1482 aa15.13■□□□□ 0.01
HMGB1-206ENST00000405805 WASHC2CQ9Y4E1 1318 aa15.13■□□□□ 0.01
HMGB1-206ENST00000405805 SMC4Q9NTJ3 1288 aa15.13■□□□□ 0.01
HMGB1-206ENST00000405805 KIF14Q15058 1648 aa15.12■□□□□ 0.01
HMGB1-206ENST00000405805 PLEKHH2Q8IVE3 1493 aa15.12■□□□□ 0.01
HMGB1-206ENST00000405805 ESF1Q9H501 851 aaKnown RBP15.12■□□□□ 0.01
HMGB1-206ENST00000405805 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
HMGB1-206ENST00000405805 CCDC141Q6ZP82 1450 aa15.12■□□□□ 0.01
HMGB1-206ENST00000405805 MAPK8IP2Q13387 824 aaPredicted RBP15.11■□□□□ 0.01
HMGB1-206ENST00000405805 HSP90AB1P08238 724 aaKnown RBP15.11■□□□□ 0.01
HMGB1-206ENST00000405805 TMEM132EQ6IEE7 984 aa15.11■□□□□ 0.01
HMGB1-206ENST00000405805 SOX12O15370 315 aa15.11■□□□□ 0.01
HMGB1-206ENST00000405805 SCAPERQ9BY12 1400 aa15.1■□□□□ 0.01
HMGB1-206ENST00000405805 E9PSI1 815 aa15.1■□□□□ 0.01
HMGB1-206ENST00000405805 NUP160Q12769 1436 aa15.1■□□□□ 0.01
HMGB1-206ENST00000405805 FAM13BQ9NYF5 915 aa15.1■□□□□ 0.01
HMGB1-206ENST00000405805 CYB5RLQ6IPT4 315 aa15.09■□□□□ 0.01
HMGB1-206ENST00000405805 RWDD1Q9H446 243 aaPredicted RBP15.09■□□□□ 0.01
HMGB1-206ENST00000405805 OSCARQ8IYS5 282 aa15.08■□□□□ 0.01
HMGB1-206ENST00000405805 DENND4BO75064 1496 aaPredicted RBP15.08■□□□□ 0
HMGB1-206ENST00000405805 POGKQ9P215 609 aa15.08■□□□□ 0
HMGB1-206ENST00000405805 HSCBQ8IWL3 235 aa15.08■□□□□ 0
HMGB1-206ENST00000405805 DNMT1P26358 1616 aaKnown RBP15.07■□□□□ 0
HMGB1-206ENST00000405805 LRRIQ1Q96JM4 1722 aa15.07■□□□□ 0
HMGB1-206ENST00000405805 PTMAP06454 111 aaKnown RBP15.07■□□□□ 0
HMGB1-206ENST00000405805 DISP3Q9P2K9 1392 aa15.07■□□□□ 0
HMGB1-206ENST00000405805 SLC12A5Q9H2X9 1139 aa15.06■□□□□ 0
HMGB1-206ENST00000405805 DUSP27Q5VZP5 1158 aa15.06■□□□□ 0
HMGB1-206ENST00000405805 MSNP26038 577 aaKnown RBP15.06■□□□□ 0
HMGB1-206ENST00000405805 TEX14Q8IWB6 1497 aa15.05■□□□□ 0
HMGB1-206ENST00000405805 TCP11L2Q8N4U5 519 aa15.05■□□□□ 0
HMGB1-206ENST00000405805 PMFBP1Q8TBY8 1022 aa15.04■□□□□ -0
HMGB1-206ENST00000405805 MYH16Q9H6N6 1097 aa15.04■□□□□ -0
HMGB1-206ENST00000405805 RAPGEF3O95398 923 aa15.04■□□□□ -0
HMGB1-206ENST00000405805 IGHDP01880 384 aa15.04■□□□□ -0
HMGB1-206ENST00000405805 TSR2Q969E8 191 aaKnown RBP15.04■□□□□ -0
HMGB1-206ENST00000405805 CGNL1Q0VF96 1302 aa15.04■□□□□ -0
HMGB1-206ENST00000405805 MTHFSP49914 203 aa15.03■□□□□ -0
HMGB1-206ENST00000405805 SPINK5Q9NQ38 1064 aaPredicted RBP15.03■□□□□ -0
HMGB1-206ENST00000405805 GOLGA6L3A6NEY3 463 aa15.03■□□□□ -0
HMGB1-206ENST00000405805 SYCP2Q9BX26 1530 aa15.02■□□□□ -0
HMGB1-206ENST00000405805 SLFN5Q08AF3 891 aa15.02□□□□□ -0.01
HMGB1-206ENST00000405805 RBM10P98175 930 aaKnown RBP15.02□□□□□ -0.01
HMGB1-206ENST00000405805 PDZRN3Q9UPQ7 1066 aa15.02□□□□□ -0.01
HMGB1-206ENST00000405805 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.01□□□□□ -0.01
HMGB1-206ENST00000405805 LNPKQ9C0E8 428 aa15.01□□□□□ -0.01
HMGB1-206ENST00000405805 PER1O15534 1290 aaPredicted RBP15.01□□□□□ -0.01
HMGB1-206ENST00000405805 TNNQ9UQP3 1299 aa15.01□□□□□ -0.01
HMGB1-206ENST00000405805 ERBINQ96RT1 1412 aa15.01□□□□□ -0.01
HMGB1-206ENST00000405805 FOXD4L5Q5VV16 416 aaPredicted RBP14.99□□□□□ -0.01
HMGB1-206ENST00000405805 FOXD4L4Q8WXT5 416 aaPredicted RBP14.99□□□□□ -0.01
HMGB1-206ENST00000405805 GGNBP2Q9H3C7 697 aa14.99□□□□□ -0.01
HMGB1-206ENST00000405805 SPATA31E1Q6ZUB1 1445 aa14.99□□□□□ -0.01
HMGB1-206ENST00000405805 RNF123Q5XPI4 1314 aa14.99□□□□□ -0.01
HMGB1-206ENST00000405805 GCC2Q8IWJ2 1684 aa14.99□□□□□ -0.01
HMGB1-206ENST00000405805 SEC24BO95487 1268 aa14.99□□□□□ -0.01
HMGB1-206ENST00000405805 TRAPPC8Q9Y2L5 1435 aa14.98□□□□□ -0.01
HMGB1-206ENST00000405805 EIF3AQ14152 1382 aaKnown RBP14.98□□□□□ -0.01
HMGB1-206ENST00000405805 ITSN2Q9NZM3 1697 aa14.98□□□□□ -0.01
HMGB1-206ENST00000405805 TESK2Q96S53 571 aa14.97□□□□□ -0.01
HMGB1-206ENST00000405805 ANKRD45Q5TZF3 282 aa14.97□□□□□ -0.01
HMGB1-206ENST00000405805 ZKSCAN2Q63HK3 967 aa14.97□□□□□ -0.01
HMGB1-206ENST00000405805 CABP2Q9NPB3 220 aa14.97□□□□□ -0.01
HMGB1-206ENST00000405805 DMRT2Q9Y5R5 561 aa14.96□□□□□ -0.01
HMGB1-206ENST00000405805 PLEKHH1Q9ULM0 1364 aa14.96□□□□□ -0.01
HMGB1-206ENST00000405805 GOLGA6L22H0YM25 854 aa14.96□□□□□ -0.01
HMGB1-206ENST00000405805 C8orf34Q49A92 452 aa14.96□□□□□ -0.01
HMGB1-206ENST00000405805 DZIP1LQ8IYY4 767 aaKnown RBP14.96□□□□□ -0.01
HMGB1-206ENST00000405805 NUTM2FA1L443 756 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 TNNT3P45378 269 aaPredicted RBP14.95□□□□□ -0.02
HMGB1-206ENST00000405805 WWC1Q8IX03 1113 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 ADGRF5Q8IZF2 1346 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 FAM135AQ9P2D6 1515 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 MINK1Q8N4C8 1332 aaPredicted RBP14.95□□□□□ -0.02
HMGB1-206ENST00000405805 NOL8Q76FK4 1167 aaKnown RBP14.95□□□□□ -0.02
HMGB1-206ENST00000405805 FAM43AQ8N2R8 423 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 RUNDC1Q96C34 613 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 C22orf23Q9BZE7 217 aa14.95□□□□□ -0.02
HMGB1-206ENST00000405805 FOXD4L6Q3SYB3 417 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-206ENST00000405805 FOXD4L3Q6VB84 417 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-206ENST00000405805 C1orf115Q9H7X2 142 aa14.94□□□□□ -0.02
HMGB1-206ENST00000405805 EXOSC9Q06265 439 aaKnown RBP14.94□□□□□ -0.02
HMGB1-206ENST00000405805 ADGRL2O95490 1459 aa14.94□□□□□ -0.02
HMGB1-206ENST00000405805 ABCC10Q5T3U5 1492 aa14.93□□□□□ -0.02
HMGB1-206ENST00000405805 KDM5BQ9UGL1 1544 aa14.93□□□□□ -0.02
HMGB1-206ENST00000405805 PLCB2Q00722 1185 aa14.93□□□□□ -0.02
HMGB1-206ENST00000405805 RALGAPBQ86X10 1494 aa14.93□□□□□ -0.02
HMGB1-206ENST00000405805 RRP9O43818 475 aaKnown RBP14.93□□□□□ -0.02
HMGB1-206ENST00000405805 HMOX1P09601 288 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms