RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 MYO5BQ9ULV0 1848 aa18.86■□□□□ 0.61
SPTLC1P3-201ENST00000403408 CHIC2Q9UKJ5 165 aa18.86■□□□□ 0.61
SPTLC1P3-201ENST00000403408 CHD2O14647 1828 aaKnown RBP18.86■□□□□ 0.61
SPTLC1P3-201ENST00000403408 COL16A1Q07092 1604 aaPredicted RBP18.85■□□□□ 0.61
SPTLC1P3-201ENST00000403408 ZFYVE9O95405 1425 aa18.85■□□□□ 0.61
SPTLC1P3-201ENST00000403408 KANK1Q14678 1352 aa18.84■□□□□ 0.61
SPTLC1P3-201ENST00000403408 JCADQ9P266 1359 aa18.84■□□□□ 0.61
SPTLC1P3-201ENST00000403408 MSH6P52701 1360 aa18.83■□□□□ 0.61
SPTLC1P3-201ENST00000403408 FGD6Q6ZV73 1430 aa18.81■□□□□ 0.6
SPTLC1P3-201ENST00000403408 PLEKHG1Q9ULL1 1385 aa18.8■□□□□ 0.6
SPTLC1P3-201ENST00000403408 SLC52A1Q9NWF4 448 aa18.79■□□□□ 0.6
SPTLC1P3-201ENST00000403408 ANKRD30AQ9BXX3 1397 aa18.79■□□□□ 0.6
SPTLC1P3-201ENST00000403408 RIMS2Q9UQ26 1411 aa18.78■□□□□ 0.6
SPTLC1P3-201ENST00000403408 UPF1Q92900 1129 aaKnown RBP eCLIP18.78■□□□□ 0.6
SPTLC1P3-201ENST00000403408 TMEM131LA2VDJ0 1609 aa18.78■□□□□ 0.6
SPTLC1P3-201ENST00000403408 GCC2Q8IWJ2 1684 aa18.77■□□□□ 0.6
SPTLC1P3-201ENST00000403408 BCANQ96GW7 911 aa18.77■□□□□ 0.6
SPTLC1P3-201ENST00000403408 ADAMTS13Q76LX8 1427 aa18.76■□□□□ 0.59
SPTLC1P3-201ENST00000403408 ADGRL2O95490 1459 aa18.75■□□□□ 0.59
SPTLC1P3-201ENST00000403408 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.74■□□□□ 0.59
SPTLC1P3-201ENST00000403408 TBX22Q9Y458 520 aa18.74■□□□□ 0.59
SPTLC1P3-201ENST00000403408 AHDC1Q5TGY3 1603 aaPredicted RBP18.74■□□□□ 0.59
SPTLC1P3-201ENST00000403408 NUTM2DQ5VT03 806 aaPredicted RBP18.73■□□□□ 0.59
SPTLC1P3-201ENST00000403408 TRIM52Q96A61 297 aa18.73■□□□□ 0.59
SPTLC1P3-201ENST00000403408 SHPRHQ149N8 1683 aa18.72■□□□□ 0.59
SPTLC1P3-201ENST00000403408 DIP2AQ14689 1571 aa18.72■□□□□ 0.59
SPTLC1P3-201ENST00000403408 SPATA31A6Q5VVP1 1343 aa18.72■□□□□ 0.59
SPTLC1P3-201ENST00000403408 RPRD2Q5VT52 1461 aaKnown RBP18.71■□□□□ 0.59
SPTLC1P3-201ENST00000403408 PTPRUQ92729 1446 aa18.71■□□□□ 0.59
SPTLC1P3-201ENST00000403408 NCOA3Q9Y6Q9 1424 aa18.71■□□□□ 0.59
SPTLC1P3-201ENST00000403408 ANKRD50Q9ULJ7 1429 aa18.68■□□□□ 0.58
SPTLC1P3-201ENST00000403408 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
SPTLC1P3-201ENST00000403408 ZNF772Q68DY9 489 aaPredicted RBP18.67■□□□□ 0.58
SPTLC1P3-201ENST00000403408 BRINP3Q76B58 766 aa18.67■□□□□ 0.58
SPTLC1P3-201ENST00000403408 C19orf44Q9H6X5 657 aa18.67■□□□□ 0.58
SPTLC1P3-201ENST00000403408 MEX3CQ5U5Q3 659 aaKnown RBP18.66■□□□□ 0.58
SPTLC1P3-201ENST00000403408 CADPS2Q86UW7 1296 aa18.65■□□□□ 0.58
SPTLC1P3-201ENST00000403408 E9PCH4 1651 aa18.65■□□□□ 0.58
SPTLC1P3-201ENST00000403408 CHGAP10645 457 aaKnown RBP18.64■□□□□ 0.57
SPTLC1P3-201ENST00000403408 C14orf37Q86TY3 774 aa18.64■□□□□ 0.57
SPTLC1P3-201ENST00000403408 NUTM2BA6NNL0 878 aaPredicted RBP18.63■□□□□ 0.57
SPTLC1P3-201ENST00000403408 NUTM2EB1AL46 878 aaPredicted RBP18.63■□□□□ 0.57
SPTLC1P3-201ENST00000403408 RXRBP28702 533 aa18.63■□□□□ 0.57
SPTLC1P3-201ENST00000403408 NUTM2AQ8IVF1 878 aaPredicted RBP18.63■□□□□ 0.57
SPTLC1P3-201ENST00000403408 AMOTL2Q9Y2J4 779 aa18.63■□□□□ 0.57
SPTLC1P3-201ENST00000403408 UNC13BO14795 1591 aa18.63■□□□□ 0.57
SPTLC1P3-201ENST00000403408 ATF3P18847 181 aa18.62■□□□□ 0.57
SPTLC1P3-201ENST00000403408 PIK3R4Q99570 1358 aa18.62■□□□□ 0.57
SPTLC1P3-201ENST00000403408 NRXN3Q9Y4C0 1643 aa18.61■□□□□ 0.57
SPTLC1P3-201ENST00000403408 AFF2P51816 1311 aa18.61■□□□□ 0.57
SPTLC1P3-201ENST00000403408 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.61■□□□□ 0.57
SPTLC1P3-201ENST00000403408 ASXL1Q8IXJ9 1541 aa18.6■□□□□ 0.57
SPTLC1P3-201ENST00000403408 CDK12Q9NYV4 1490 aaPredicted RBP18.6■□□□□ 0.57
SPTLC1P3-201ENST00000403408 HDGFP51858 240 aaKnown RBP18.6■□□□□ 0.57
SPTLC1P3-201ENST00000403408 FAM50AQ14320 339 aaKnown RBP18.6■□□□□ 0.57
SPTLC1P3-201ENST00000403408 DDX17Q92841 729 aaKnown RBP18.6■□□□□ 0.57
SPTLC1P3-201ENST00000403408 MST1RQ04912 1400 aa18.59■□□□□ 0.57
SPTLC1P3-201ENST00000403408 XRN1Q8IZH2 1706 aaKnown RBP18.59■□□□□ 0.57
SPTLC1P3-201ENST00000403408 SETD5Q9C0A6 1442 aa18.58■□□□□ 0.57
SPTLC1P3-201ENST00000403408 APLP2Q06481 763 aa18.58■□□□□ 0.56
SPTLC1P3-201ENST00000403408 NHSL1Q5SYE7 1610 aa18.58■□□□□ 0.56
SPTLC1P3-201ENST00000403408 TRPM2O94759 1503 aa18.58■□□□□ 0.56
SPTLC1P3-201ENST00000403408 EP400Q96L91 3159 aa18.58■□□□□ 0.56
SPTLC1P3-201ENST00000403408 RGS12O14924 1447 aa18.57■□□□□ 0.56
SPTLC1P3-201ENST00000403408 IQGAP3Q86VI3 1631 aa18.55■□□□□ 0.56
SPTLC1P3-201ENST00000403408 DCCP43146 1447 aa18.55■□□□□ 0.56
SPTLC1P3-201ENST00000403408 METP08581 1390 aa18.55■□□□□ 0.56
SPTLC1P3-201ENST00000403408 PNPLA6Q8IY17 1366 aa18.53■□□□□ 0.56
SPTLC1P3-201ENST00000403408 SETBP1Q9Y6X0 1596 aa18.52■□□□□ 0.56
SPTLC1P3-201ENST00000403408 C8orf37Q96NL8 207 aa18.51■□□□□ 0.55
SPTLC1P3-201ENST00000403408 QTRT2Q9H974 415 aaKnown RBP18.51■□□□□ 0.55
SPTLC1P3-201ENST00000403408 NALCNQ8IZF0 1738 aa18.49■□□□□ 0.55
SPTLC1P3-201ENST00000403408 RBM6P78332 1123 aaKnown RBP18.48■□□□□ 0.55
SPTLC1P3-201ENST00000403408 LRRC59Q96AG4 307 aaKnown RBP18.48■□□□□ 0.55
SPTLC1P3-201ENST00000403408 NUP155O75694 1391 aa18.47■□□□□ 0.55
SPTLC1P3-201ENST00000403408 ROCK1Q13464 1354 aa18.47■□□□□ 0.55
SPTLC1P3-201ENST00000403408 ADGRL3Q9HAR2 1447 aa18.47■□□□□ 0.55
SPTLC1P3-201ENST00000403408 ADAMTS2O95450 1211 aa18.44■□□□□ 0.54
SPTLC1P3-201ENST00000403408 C1orf167Q5SNV9 1468 aa18.44■□□□□ 0.54
SPTLC1P3-201ENST00000403408 LAMC1P11047 1609 aa18.43■□□□□ 0.54
SPTLC1P3-201ENST00000403408 NEXMIFQ5QGS0 1516 aa18.43■□□□□ 0.54
SPTLC1P3-201ENST00000403408 SPHKAPQ2M3C7 1700 aa18.43■□□□□ 0.54
SPTLC1P3-201ENST00000403408 ORAI2Q96SN7 254 aa18.41■□□□□ 0.54
SPTLC1P3-201ENST00000403408 NGLY1Q96IV0 654 aa18.4■□□□□ 0.54
SPTLC1P3-201ENST00000403408 CLTCL1P53675 1640 aa18.4■□□□□ 0.54
SPTLC1P3-201ENST00000403408 SOS2Q07890 1332 aaPredicted RBP18.4■□□□□ 0.54
SPTLC1P3-201ENST00000403408 ZNF326Q5BKZ1 582 aaKnown RBP18.39■□□□□ 0.53
SPTLC1P3-201ENST00000403408 ROBO2Q9HCK4 1378 aa18.39■□□□□ 0.53
SPTLC1P3-201ENST00000403408 FNBP4Q8N3X1 1017 aaPredicted RBP18.37■□□□□ 0.53
SPTLC1P3-201ENST00000403408 ATRNO75882 1429 aa18.37■□□□□ 0.53
SPTLC1P3-201ENST00000403408 USP21Q9UK80 565 aa18.36■□□□□ 0.53
SPTLC1P3-201ENST00000403408 ITGAEP38570 1179 aa18.35■□□□□ 0.53
SPTLC1P3-201ENST00000403408 ATAD2Q6PL18 1390 aa18.34■□□□□ 0.53
SPTLC1P3-201ENST00000403408 PTCH1Q13635 1447 aa18.33■□□□□ 0.53
SPTLC1P3-201ENST00000403408 COL22A1Q8NFW1 1626 aaPredicted RBP18.33■□□□□ 0.52
SPTLC1P3-201ENST00000403408 MYOM2P54296 1465 aa18.33■□□□□ 0.52
SPTLC1P3-201ENST00000403408 TRPC5Q9UL62 973 aaPredicted RBP18.32■□□□□ 0.52
SPTLC1P3-201ENST00000403408 BCL9LQ86UU0 1499 aa18.32■□□□□ 0.52
SPTLC1P3-201ENST00000403408 PRAG1Q86YV5 1406 aa18.3■□□□□ 0.52
SPTLC1P3-201ENST00000403408 PXDNQ92626 1479 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms