RNA–Protein interactions for RNA: ENST00000396629.6

SCFD1-202, Transcript of sec1 family domain containing 1, humanhuman

TSL 2 BASIC

Gene SCFD1, Length 2,021 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-202ENST00000396629 MYO5BQ9ULV0 1848 aa13.36□□□□□ -0.27
SCFD1-202ENST00000396629 DAPK1P53355 1430 aa13.36□□□□□ -0.27
SCFD1-202ENST00000396629 SLC52A1Q9NWF4 448 aa13.35□□□□□ -0.27
SCFD1-202ENST00000396629 FGD6Q6ZV73 1430 aa13.34□□□□□ -0.27
SCFD1-202ENST00000396629 NCOA3Q9Y6Q9 1424 aa13.34□□□□□ -0.27
SCFD1-202ENST00000396629 LRP6O75581 1613 aa13.34□□□□□ -0.27
SCFD1-202ENST00000396629 UPF1Q92900 1129 aaKnown RBP eCLIP13.34□□□□□ -0.27
SCFD1-202ENST00000396629 PLEKHG1Q9ULL1 1385 aa13.33□□□□□ -0.27
SCFD1-202ENST00000396629 ZFYVE9O95405 1425 aa13.33□□□□□ -0.27
SCFD1-202ENST00000396629 SHPRHQ149N8 1683 aa13.33□□□□□ -0.27
SCFD1-202ENST00000396629 SPATA31A6Q5VVP1 1343 aa13.33□□□□□ -0.28
SCFD1-202ENST00000396629 AHDC1Q5TGY3 1603 aaPredicted RBP13.32□□□□□ -0.28
SCFD1-202ENST00000396629 ANKRD30AQ9BXX3 1397 aa13.32□□□□□ -0.28
SCFD1-202ENST00000396629 GCC2Q8IWJ2 1684 aa13.31□□□□□ -0.28
SCFD1-202ENST00000396629 ZNF772Q68DY9 489 aaPredicted RBP13.31□□□□□ -0.28
SCFD1-202ENST00000396629 BCANQ96GW7 911 aa13.31□□□□□ -0.28
SCFD1-202ENST00000396629 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.31□□□□□ -0.28
SCFD1-202ENST00000396629 RPRD2Q5VT52 1461 aaKnown RBP13.31□□□□□ -0.28
SCFD1-202ENST00000396629 TMEM131LA2VDJ0 1609 aa13.3□□□□□ -0.28
SCFD1-202ENST00000396629 TBX22Q9Y458 520 aa13.3□□□□□ -0.28
SCFD1-202ENST00000396629 RIMS2Q9UQ26 1411 aa13.3□□□□□ -0.28
SCFD1-202ENST00000396629 HDGFP51858 240 aaKnown RBP13.29□□□□□ -0.28
SCFD1-202ENST00000396629 MEX3CQ5U5Q3 659 aaKnown RBP13.28□□□□□ -0.28
SCFD1-202ENST00000396629 CHIC2Q9UKJ5 165 aa13.28□□□□□ -0.28
SCFD1-202ENST00000396629 ADGRL2O95490 1459 aa13.27□□□□□ -0.28
SCFD1-202ENST00000396629 DIP2AQ14689 1571 aa13.27□□□□□ -0.28
SCFD1-202ENST00000396629 TRIM52Q96A61 297 aa13.27□□□□□ -0.28
SCFD1-202ENST00000396629 CDK12Q9NYV4 1490 aaPredicted RBP13.27□□□□□ -0.29
SCFD1-202ENST00000396629 CADPS2Q86UW7 1296 aa13.26□□□□□ -0.29
SCFD1-202ENST00000396629 C19orf44Q9H6X5 657 aa13.26□□□□□ -0.29
SCFD1-202ENST00000396629 ADAMTS13Q76LX8 1427 aa13.26□□□□□ -0.29
SCFD1-202ENST00000396629 PPP1R15AO75807 674 aaPredicted RBP13.25□□□□□ -0.29
SCFD1-202ENST00000396629 RXRBP28702 533 aa13.25□□□□□ -0.29
SCFD1-202ENST00000396629 PIK3R4Q99570 1358 aa13.25□□□□□ -0.29
SCFD1-202ENST00000396629 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.25□□□□□ -0.29
SCFD1-202ENST00000396629 ATF3P18847 181 aa13.23□□□□□ -0.29
SCFD1-202ENST00000396629 C14orf37Q86TY3 774 aa13.23□□□□□ -0.29
SCFD1-202ENST00000396629 LOC105371045A0A1W2PR82 267 aa13.23□□□□□ -0.29
SCFD1-202ENST00000396629 BRINP3Q76B58 766 aa13.22□□□□□ -0.29
SCFD1-202ENST00000396629 TRPM2O94759 1503 aa13.21□□□□□ -0.29
SCFD1-202ENST00000396629 ANKRD50Q9ULJ7 1429 aa13.21□□□□□ -0.29
SCFD1-202ENST00000396629 NHSL1Q5SYE7 1610 aa13.21□□□□□ -0.29
SCFD1-202ENST00000396629 SETD5Q9C0A6 1442 aa13.21□□□□□ -0.3
SCFD1-202ENST00000396629 E9PCH4 1651 aa13.2□□□□□ -0.3
SCFD1-202ENST00000396629 UNC13BO14795 1591 aa13.2□□□□□ -0.3
SCFD1-202ENST00000396629 DCCP43146 1447 aa13.2□□□□□ -0.3
SCFD1-202ENST00000396629 PTPRUQ92729 1446 aa13.2□□□□□ -0.3
SCFD1-202ENST00000396629 AFF2P51816 1311 aa13.2□□□□□ -0.3
SCFD1-202ENST00000396629 ASXL1Q8IXJ9 1541 aa13.19□□□□□ -0.3
SCFD1-202ENST00000396629 NUTM2BA6NNL0 878 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-202ENST00000396629 NUTM2EB1AL46 878 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-202ENST00000396629 NUTM2AQ8IVF1 878 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-202ENST00000396629 APLP2Q06481 763 aa13.18□□□□□ -0.3
SCFD1-202ENST00000396629 AMOTL2Q9Y2J4 779 aa13.18□□□□□ -0.3
SCFD1-202ENST00000396629 XRN1Q8IZH2 1706 aaKnown RBP13.18□□□□□ -0.3
SCFD1-202ENST00000396629 CHGAP10645 457 aaKnown RBP13.18□□□□□ -0.3
SCFD1-202ENST00000396629 NUTM2DQ5VT03 806 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-202ENST00000396629 RGS12O14924 1447 aa13.17□□□□□ -0.3
SCFD1-202ENST00000396629 NRXN3Q9Y4C0 1643 aa13.16□□□□□ -0.3
SCFD1-202ENST00000396629 MST1RQ04912 1400 aa13.16□□□□□ -0.3
SCFD1-202ENST00000396629 IQGAP3Q86VI3 1631 aa13.15□□□□□ -0.3
SCFD1-202ENST00000396629 RBM6P78332 1123 aaKnown RBP13.15□□□□□ -0.3
SCFD1-202ENST00000396629 LRRC59Q96AG4 307 aaKnown RBP13.15□□□□□ -0.3
SCFD1-202ENST00000396629 QTRT2Q9H974 415 aaKnown RBP13.14□□□□□ -0.31
SCFD1-202ENST00000396629 SETBP1Q9Y6X0 1596 aa13.14□□□□□ -0.31
SCFD1-202ENST00000396629 PNPLA6Q8IY17 1366 aa13.13□□□□□ -0.31
SCFD1-202ENST00000396629 FAM50AQ14320 339 aaKnown RBP13.12□□□□□ -0.31
SCFD1-202ENST00000396629 C8orf37Q96NL8 207 aa13.12□□□□□ -0.31
SCFD1-202ENST00000396629 LAMC1P11047 1609 aa13.11□□□□□ -0.31
SCFD1-202ENST00000396629 NALCNQ8IZF0 1738 aa13.11□□□□□ -0.31
SCFD1-202ENST00000396629 ADGRL3Q9HAR2 1447 aa13.1□□□□□ -0.31
SCFD1-202ENST00000396629 DDX17Q92841 729 aaKnown RBP13.09□□□□□ -0.31
SCFD1-202ENST00000396629 METP08581 1390 aa13.08□□□□□ -0.31
SCFD1-202ENST00000396629 ROCK1Q13464 1354 aa13.08□□□□□ -0.32
SCFD1-202ENST00000396629 NGLY1Q96IV0 654 aa13.08□□□□□ -0.32
SCFD1-202ENST00000396629 SPHKAPQ2M3C7 1700 aa13.08□□□□□ -0.32
SCFD1-202ENST00000396629 ATAD2Q6PL18 1390 aa13.07□□□□□ -0.32
SCFD1-202ENST00000396629 C1orf167Q5SNV9 1468 aa13.06□□□□□ -0.32
SCFD1-202ENST00000396629 NUP155O75694 1391 aa13.05□□□□□ -0.32
SCFD1-202ENST00000396629 ADAMTS2O95450 1211 aa13.05□□□□□ -0.32
SCFD1-202ENST00000396629 SOS2Q07890 1332 aaPredicted RBP13.04□□□□□ -0.32
SCFD1-202ENST00000396629 COL22A1Q8NFW1 1626 aaPredicted RBP13.04□□□□□ -0.32
SCFD1-202ENST00000396629 PTCH1Q13635 1447 aa13.04□□□□□ -0.32
SCFD1-202ENST00000396629 NEXMIFQ5QGS0 1516 aa13.03□□□□□ -0.32
SCFD1-202ENST00000396629 FNBP4Q8N3X1 1017 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-202ENST00000396629 USP21Q9UK80 565 aa13.03□□□□□ -0.32
SCFD1-202ENST00000396629 TRPC5Q9UL62 973 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-202ENST00000396629 ATRNO75882 1429 aa13.03□□□□□ -0.32
SCFD1-202ENST00000396629 FOXD1Q16676 465 aa13.03□□□□□ -0.32
SCFD1-202ENST00000396629 ZNF326Q5BKZ1 582 aaKnown RBP13.02□□□□□ -0.33
SCFD1-202ENST00000396629 ZRANB1Q9UGI0 708 aa13.02□□□□□ -0.33
SCFD1-202ENST00000396629 MARF1Q9Y4F3 1742 aaKnown RBP13.02□□□□□ -0.33
SCFD1-202ENST00000396629 KIF1BO60333 1816 aa13□□□□□ -0.33
SCFD1-202ENST00000396629 CLTCL1P53675 1640 aa13□□□□□ -0.33
SCFD1-202ENST00000396629 ORAI2Q96SN7 254 aa13□□□□□ -0.33
SCFD1-202ENST00000396629 CCDC125Q86Z20 511 aa13□□□□□ -0.33
SCFD1-202ENST00000396629 PRAG1Q86YV5 1406 aa12.99□□□□□ -0.33
SCFD1-202ENST00000396629 MYOM2P54296 1465 aa12.98□□□□□ -0.33
SCFD1-202ENST00000396629 ROBO2Q9HCK4 1378 aa12.97□□□□□ -0.33
SCFD1-202ENST00000396629 BCL9LQ86UU0 1499 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms