RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 ZNF316A6NFI3 1004 aaPredicted RBP19.34■□□□□ 0.69
VAPB-202ENST00000395802 ROCK2O75116 1388 aaKnown RBP19.34■□□□□ 0.69
VAPB-202ENST00000395802 PPLO60437 1756 aa19.34■□□□□ 0.69
VAPB-202ENST00000395802 PTPRMP28827 1452 aa19.32■□□□□ 0.68
VAPB-202ENST00000395802 EIF4G2P78344 907 aaKnown RBP eCLIP19.32■□□□□ 0.68
VAPB-202ENST00000395802 NEXMIFQ5QGS0 1516 aa19.32■□□□□ 0.68
VAPB-202ENST00000395802 NRXN1Q9ULB1 1477 aa19.32■□□□□ 0.68
VAPB-202ENST00000395802 SETD1BQ9UPS6 1966 aaKnown RBP19.32■□□□□ 0.68
VAPB-202ENST00000395802 THEMISQ8N1K5 641 aaPredicted RBP19.31■□□□□ 0.68
VAPB-202ENST00000395802 CARD11Q9BXL7 1154 aa19.31■□□□□ 0.68
VAPB-202ENST00000395802 TRPM1Q7Z4N2 1603 aa19.3■□□□□ 0.68
VAPB-202ENST00000395802 ADGRF5Q8IZF2 1346 aa19.29■□□□□ 0.68
VAPB-202ENST00000395802 KIAA1210Q9ULL0 1709 aa19.29■□□□□ 0.68
VAPB-202ENST00000395802 GPRASP1Q5JY77 1395 aa19.29■□□□□ 0.68
VAPB-202ENST00000395802 MYO5BQ9ULV0 1848 aa19.28■□□□□ 0.68
VAPB-202ENST00000395802 MYO3AQ8NEV4 1616 aa19.28■□□□□ 0.68
VAPB-202ENST00000395802 PIK3C2GO75747 1445 aa19.28■□□□□ 0.68
VAPB-202ENST00000395802 UBR1Q8IWV7 1749 aa19.28■□□□□ 0.68
VAPB-202ENST00000395802 RIMS2Q9UQ26 1411 aa19.28■□□□□ 0.68
VAPB-202ENST00000395802 TMEM2Q9UHN6 1383 aa19.27■□□□□ 0.68
VAPB-202ENST00000395802 EID1Q9Y6B2 187 aa19.26■□□□□ 0.67
VAPB-202ENST00000395802 C14orf93Q9H972 538 aaKnown RBP19.25■□□□□ 0.67
VAPB-202ENST00000395802 LAMC1P11047 1609 aa19.25■□□□□ 0.67
VAPB-202ENST00000395802 CEP170BQ9Y4F5 1589 aaPredicted RBP19.25■□□□□ 0.67
VAPB-202ENST00000395802 USP47Q96K76 1375 aa19.23■□□□□ 0.67
VAPB-202ENST00000395802 NBPF1Q3BBV0 1214 aa19.23■□□□□ 0.67
VAPB-202ENST00000395802 CFAP70Q5T0N1 1121 aa19.22■□□□□ 0.67
VAPB-202ENST00000395802 NUTM2DQ5VT03 806 aaPredicted RBP19.22■□□□□ 0.67
VAPB-202ENST00000395802 SLIT1O75093 1534 aa19.22■□□□□ 0.67
VAPB-202ENST00000395802 HSPA5P11021 654 aaKnown RBP19.21■□□□□ 0.67
VAPB-202ENST00000395802 SETBP1Q9Y6X0 1596 aa19.21■□□□□ 0.67
VAPB-202ENST00000395802 ZNF142P52746 1687 aaPredicted RBP19.21■□□□□ 0.67
VAPB-202ENST00000395802 EIF3AQ14152 1382 aaKnown RBP19.21■□□□□ 0.67
VAPB-202ENST00000395802 ARHGAP23Q9P227 1491 aa19.19■□□□□ 0.66
VAPB-202ENST00000395802 SLC24A1O60721 1099 aa19.19■□□□□ 0.66
VAPB-202ENST00000395802 TXNDC2Q86VQ3 553 aa19.19■□□□□ 0.66
VAPB-202ENST00000395802 SCAF11Q99590 1463 aaKnown RBP19.18■□□□□ 0.66
VAPB-202ENST00000395802 KDM4FA0A1W2PPD8 638 aa19.18■□□□□ 0.66
VAPB-202ENST00000395802 BCANQ96GW7 911 aa19.16■□□□□ 0.66
VAPB-202ENST00000395802 PLEKHG1Q9ULL1 1385 aa19.16■□□□□ 0.66
VAPB-202ENST00000395802 ANKLE2Q86XL3 938 aa19.15■□□□□ 0.66
VAPB-202ENST00000395802 ST20-MTHFSA0A0A6YYL1 179 aa19.13■□□□□ 0.65
VAPB-202ENST00000395802 DIEXFQ68CQ4 756 aaKnown RBP19.13■□□□□ 0.65
VAPB-202ENST00000395802 HIRIP3Q9BW71 556 aaPredicted RBP19.13■□□□□ 0.65
VAPB-202ENST00000395802 ALKQ9UM73 1620 aa19.13■□□□□ 0.65
VAPB-202ENST00000395802 LTKP29376 864 aa19.12■□□□□ 0.65
VAPB-202ENST00000395802 ADGRB1O14514 1584 aa19.12■□□□□ 0.65
VAPB-202ENST00000395802 IQGAP1P46940 1657 aa19.11■□□□□ 0.65
VAPB-202ENST00000395802 TMEM132EQ6IEE7 984 aa19.09■□□□□ 0.65
VAPB-202ENST00000395802 TBX22Q9Y458 520 aa19.07■□□□□ 0.64
VAPB-202ENST00000395802 DIP2AQ14689 1571 aa19.07■□□□□ 0.64
VAPB-202ENST00000395802 YTHDC2Q9H6S0 1430 aaKnown RBP19.06■□□□□ 0.64
VAPB-202ENST00000395802 TMF1P82094 1093 aa19.06■□□□□ 0.64
VAPB-202ENST00000395802 CDCA8Q53HL2 280 aa19.06■□□□□ 0.64
VAPB-202ENST00000395802 TRAK1Q9UPV9 953 aa19.06■□□□□ 0.64
VAPB-202ENST00000395802 NRXN3Q9Y4C0 1643 aa19.05■□□□□ 0.64
VAPB-202ENST00000395802 CENPJQ9HC77 1338 aaPredicted RBP19.05■□□□□ 0.64
VAPB-202ENST00000395802 ADAMTS13Q76LX8 1427 aa19.04■□□□□ 0.64
VAPB-202ENST00000395802 LRPPRCP42704 1394 aaKnown RBP19.04■□□□□ 0.64
VAPB-202ENST00000395802 SBNO2Q9Y2G9 1366 aa19.04■□□□□ 0.64
VAPB-202ENST00000395802 SENP3Q9H4L4 574 aaPredicted RBP19.03■□□□□ 0.64
VAPB-202ENST00000395802 ABCC11Q96J66 1382 aa19.03■□□□□ 0.64
VAPB-202ENST00000395802 TESK2Q96S53 571 aa19.02■□□□□ 0.64
VAPB-202ENST00000395802 PIK3R4Q99570 1358 aa19.02■□□□□ 0.64
VAPB-202ENST00000395802 ASXL1Q8IXJ9 1541 aa19.02■□□□□ 0.64
VAPB-202ENST00000395802 SETD1AO15047 1707 aaKnown RBP19.02■□□□□ 0.64
VAPB-202ENST00000395802 MED14O60244 1454 aa19.02■□□□□ 0.63
VAPB-202ENST00000395802 STK26Q9P289 416 aa19.02■□□□□ 0.63
VAPB-202ENST00000395802 SIRT1Q96EB6 747 aa19.01■□□□□ 0.63
VAPB-202ENST00000395802 POLR1AO95602 1720 aaPredicted RBP19.01■□□□□ 0.63
VAPB-202ENST00000395802 CCDC7Q96M83 1385 aa19.01■□□□□ 0.63
VAPB-202ENST00000395802 DLC1Q96QB1 1528 aa19.01■□□□□ 0.63
VAPB-202ENST00000395802 WASHC2AQ641Q2 1341 aa19.01■□□□□ 0.63
VAPB-202ENST00000395802 METP08581 1390 aa19■□□□□ 0.63
VAPB-202ENST00000395802 SLC26A8Q96RN1 970 aa19■□□□□ 0.63
VAPB-202ENST00000395802 POGKQ9P215 609 aa19■□□□□ 0.63
VAPB-202ENST00000395802 KIF7Q2M1P5 1343 aa18.99■□□□□ 0.63
VAPB-202ENST00000395802 NPHP4O75161 1426 aaPredicted RBP18.99■□□□□ 0.63
VAPB-202ENST00000395802 TECPR2O15040 1411 aa18.98■□□□□ 0.63
VAPB-202ENST00000395802 ARHGEF28Q8N1W1 1705 aaKnown RBP18.97■□□□□ 0.63
VAPB-202ENST00000395802 FAM135BQ49AJ0 1406 aa18.97■□□□□ 0.63
VAPB-202ENST00000395802 LMTK3Q96Q04 1460 aa18.96■□□□□ 0.63
VAPB-202ENST00000395802 C11orf95C9JLR9 678 aaPredicted RBP18.95■□□□□ 0.62
VAPB-202ENST00000395802 DDX10Q13206 875 aaKnown RBP18.95■□□□□ 0.62
VAPB-202ENST00000395802 PRAM1Q96QH2 718 aa18.95■□□□□ 0.62
VAPB-202ENST00000395802 KNDC1Q76NI1 1749 aa18.95■□□□□ 0.62
VAPB-202ENST00000395802 EVC2Q86UK5 1308 aa18.94■□□□□ 0.62
VAPB-202ENST00000395802 NCKAP5LQ9HCH0 1330 aa18.94■□□□□ 0.62
VAPB-202ENST00000395802 PUS7Q96PZ0 661 aaKnown RBP18.93■□□□□ 0.62
VAPB-202ENST00000395802 POLR3GLQ9BT43 218 aa18.93■□□□□ 0.62
VAPB-202ENST00000395802 QRICH2Q9H0J4 1663 aa18.93■□□□□ 0.62
VAPB-202ENST00000395802 AMOTL2Q9Y2J4 779 aa18.93■□□□□ 0.62
VAPB-202ENST00000395802 CPS1P31327 1500 aa18.92■□□□□ 0.62
VAPB-202ENST00000395802 DISP3Q9P2K9 1392 aa18.92■□□□□ 0.62
VAPB-202ENST00000395802 PTCH1Q13635 1447 aa18.91■□□□□ 0.62
VAPB-202ENST00000395802 HSPA2P54652 639 aa18.9■□□□□ 0.62
VAPB-202ENST00000395802 SAFB2Q14151 953 aaKnown RBP eCLIP18.88■□□□□ 0.61
VAPB-202ENST00000395802 PTPRUQ92729 1446 aa18.87■□□□□ 0.61
VAPB-202ENST00000395802 WAPLQ7Z5K2 1190 aa18.87■□□□□ 0.61
VAPB-202ENST00000395802 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms