RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SCAF11Q99590 1463 aaKnown RBP27.14■■□□□ 1.94
CLK3-202ENST00000395066 SPHKAPQ2M3C7 1700 aa27.13■■□□□ 1.93
CLK3-202ENST00000395066 KIF3BO15066 747 aa27.13■■□□□ 1.93
CLK3-202ENST00000395066 DUSP27Q5VZP5 1158 aa27.13■■□□□ 1.93
CLK3-202ENST00000395066 INSRP06213 1382 aa27.13■■□□□ 1.93
CLK3-202ENST00000395066 CFAP70Q5T0N1 1121 aa27.11■■□□□ 1.93
CLK3-202ENST00000395066 UGGT1Q9NYU2 1555 aa27.11■■□□□ 1.93
CLK3-202ENST00000395066 CEP152O94986 1710 aa27.11■■□□□ 1.93
CLK3-202ENST00000395066 PTPRTO14522 1441 aa27.09■■□□□ 1.93
CLK3-202ENST00000395066 LAS1LQ9Y4W2 734 aaKnown RBP27.08■■□□□ 1.93
CLK3-202ENST00000395066 MS4A1P11836 297 aa27.08■■□□□ 1.93
CLK3-202ENST00000395066 SYNMO15061 1565 aa27.08■■□□□ 1.92
CLK3-202ENST00000395066 ASXL1Q8IXJ9 1541 aa27.07■■□□□ 1.92
CLK3-202ENST00000395066 MYOM1P52179 1685 aa27.07■■□□□ 1.92
CLK3-202ENST00000395066 CDCA8Q53HL2 280 aa27.06■■□□□ 1.92
CLK3-202ENST00000395066 SPINK5Q9NQ38 1064 aaPredicted RBP27.06■■□□□ 1.92
CLK3-202ENST00000395066 GOLGA2Q08379 1002 aa27.06■■□□□ 1.92
CLK3-202ENST00000395066 ADGRF5Q8IZF2 1346 aa27.06■■□□□ 1.92
CLK3-202ENST00000395066 ZNF521Q96K83 1311 aa27.06■■□□□ 1.92
CLK3-202ENST00000395066 SCAPERQ9BY12 1400 aa27.04■■□□□ 1.92
CLK3-202ENST00000395066 UHRF1BP1LA0JNW5 1464 aa27.04■■□□□ 1.92
CLK3-202ENST00000395066 RTEL1-TNFRSF6BF6WH68 1400 aa27.04■■□□□ 1.92
CLK3-202ENST00000395066 APAF1O14727 1248 aa27.03■■□□□ 1.92
CLK3-202ENST00000395066 CLASP1Q7Z460 1538 aa27.02■■□□□ 1.92
CLK3-202ENST00000395066 ATP7AQ04656 1500 aa27.01■■□□□ 1.91
CLK3-202ENST00000395066 DEPDC5O75140 1603 aa27.01■■□□□ 1.91
CLK3-202ENST00000395066 TET3O43151 1660 aa27.01■■□□□ 1.91
CLK3-202ENST00000395066 KANK1Q14678 1352 aa27.01■■□□□ 1.91
CLK3-202ENST00000395066 FANCAO15360 1455 aa27.01■■□□□ 1.91
CLK3-202ENST00000395066 CARD14Q9BXL6 1004 aa27■■□□□ 1.91
CLK3-202ENST00000395066 KDM2BQ8NHM5 1336 aa26.99■■□□□ 1.91
CLK3-202ENST00000395066 SLFN5Q08AF3 891 aa26.99■■□□□ 1.91
CLK3-202ENST00000395066 DMRT2Q9Y5R5 561 aa26.99■■□□□ 1.91
CLK3-202ENST00000395066 EIF3AQ14152 1382 aaKnown RBP26.98■■□□□ 1.91
CLK3-202ENST00000395066 PIK3C2GO75747 1445 aa26.98■■□□□ 1.91
CLK3-202ENST00000395066 ERVK-7P63135 1459 aa26.96■■□□□ 1.91
CLK3-202ENST00000395066 USP35Q9P2H5 1018 aa26.96■■□□□ 1.91
CLK3-202ENST00000395066 KDM5AP29375 1690 aaKnown RBP26.96■■□□□ 1.91
CLK3-202ENST00000395066 BCAR3O75815 825 aa26.95■■□□□ 1.91
CLK3-202ENST00000395066 NEFMP07197 916 aa26.95■■□□□ 1.91
CLK3-202ENST00000395066 CHGAP10645 457 aaKnown RBP26.95■■□□□ 1.9
CLK3-202ENST00000395066 ABCA6Q8N139 1617 aa26.94■■□□□ 1.9
CLK3-202ENST00000395066 INO80Q9ULG1 1556 aaPredicted RBP26.94■■□□□ 1.9
CLK3-202ENST00000395066 ADGRL1O94910 1474 aa26.93■■□□□ 1.9
CLK3-202ENST00000395066 TNNT2P45379 298 aaPredicted RBP26.92■■□□□ 1.9
CLK3-202ENST00000395066 VWDEQ8N2E2 1590 aa26.92■■□□□ 1.9
CLK3-202ENST00000395066 SLC4A3P48751 1232 aa26.91■■□□□ 1.9
CLK3-202ENST00000395066 STAC3Q96MF2 364 aa26.91■■□□□ 1.9
CLK3-202ENST00000395066 MROH1Q8NDA8 1641 aa26.91■■□□□ 1.9
CLK3-202ENST00000395066 MAP3K4Q9Y6R4 1608 aa26.9■■□□□ 1.9
CLK3-202ENST00000395066 RGS3P49796 1198 aa26.9■■□□□ 1.9
CLK3-202ENST00000395066 CENPQQ7L2Z9 268 aaPredicted RBP26.9■■□□□ 1.9
CLK3-202ENST00000395066 PPM1GO15355 546 aaPredicted RBP26.89■■□□□ 1.9
CLK3-202ENST00000395066 ARAP3Q8WWN8 1544 aa26.89■■□□□ 1.9
CLK3-202ENST00000395066 NPC1L1Q9UHC9 1359 aa26.88■■□□□ 1.89
CLK3-202ENST00000395066 ABCA9Q8IUA7 1624 aa26.88■■□□□ 1.89
CLK3-202ENST00000395066 TRMT2AQ8IZ69 625 aaKnown RBP26.88■■□□□ 1.89
CLK3-202ENST00000395066 MROH2AA6NES4 1674 aa26.87■■□□□ 1.89
CLK3-202ENST00000395066 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.87■■□□□ 1.89
CLK3-202ENST00000395066 TRAK1Q9UPV9 953 aa26.87■■□□□ 1.89
CLK3-202ENST00000395066 NEUROD2Q15784 382 aa26.85■■□□□ 1.89
CLK3-202ENST00000395066 DDRGK1Q96HY6 314 aa26.85■■□□□ 1.89
CLK3-202ENST00000395066 KIAA1210Q9ULL0 1709 aa26.85■■□□□ 1.89
CLK3-202ENST00000395066 CFAP65Q6ZU64 1925 aaKnown RBP26.85■■□□□ 1.89
CLK3-202ENST00000395066 NKTRP30414 1462 aaKnown RBP26.84■■□□□ 1.89
CLK3-202ENST00000395066 NOS1P29475 1434 aa26.84■■□□□ 1.89
CLK3-202ENST00000395066 TMEM132EQ6IEE7 984 aa26.83■■□□□ 1.88
CLK3-202ENST00000395066 RRP7AQ9Y3A4 280 aaKnown RBP26.83■■□□□ 1.88
CLK3-202ENST00000395066 KIF1BO60333 1816 aa26.82■■□□□ 1.88
CLK3-202ENST00000395066 MYOM2P54296 1465 aa26.82■■□□□ 1.88
CLK3-202ENST00000395066 C8orf34Q49A92 452 aa26.82■■□□□ 1.88
CLK3-202ENST00000395066 SLC12A5Q9H2X9 1139 aa26.82■■□□□ 1.88
CLK3-202ENST00000395066 PPRC1Q5VV67 1664 aaKnown RBP26.81■■□□□ 1.88
CLK3-202ENST00000395066 SENP3Q9H4L4 574 aaPredicted RBP26.81■■□□□ 1.88
CLK3-202ENST00000395066 EFCAB6Q5THR3 1501 aa26.8■■□□□ 1.88
CLK3-202ENST00000395066 IL27Q8NEV9 243 aa26.8■■□□□ 1.88
CLK3-202ENST00000395066 E9PSI1 815 aa26.79■■□□□ 1.88
CLK3-202ENST00000395066 NUTM2DQ5VT03 806 aaPredicted RBP26.79■■□□□ 1.88
CLK3-202ENST00000395066 CENPJQ9HC77 1338 aaPredicted RBP26.79■■□□□ 1.88
CLK3-202ENST00000395066 GGT6Q6P531 493 aa26.78■■□□□ 1.88
CLK3-202ENST00000395066 NSD3Q9BZ95 1437 aa26.77■■□□□ 1.88
CLK3-202ENST00000395066 FAM161AQ3B820 660 aa26.77■■□□□ 1.88
CLK3-202ENST00000395066 ASXL2Q76L83 1435 aa26.77■■□□□ 1.88
CLK3-202ENST00000395066 IFT172Q9UG01 1749 aa26.76■■□□□ 1.88
CLK3-202ENST00000395066 KIDINS220Q9ULH0 1771 aa26.76■■□□□ 1.87
CLK3-202ENST00000395066 IGHDP01880 384 aa26.76■■□□□ 1.87
CLK3-202ENST00000395066 WWC1Q8IX03 1113 aa26.76■■□□□ 1.87
CLK3-202ENST00000395066 PANK1Q8TE04 598 aa26.76■■□□□ 1.87
CLK3-202ENST00000395066 MORC1Q86VD1 984 aa26.75■■□□□ 1.87
CLK3-202ENST00000395066 COG6Q9Y2V7 657 aa26.73■■□□□ 1.87
CLK3-202ENST00000395066 FRAT1Q92837 279 aaPredicted RBP26.72■■□□□ 1.87
CLK3-202ENST00000395066 CANXP27824 592 aaKnown RBP26.71■■□□□ 1.87
CLK3-202ENST00000395066 NEURL4Q96JN8 1562 aa26.71■■□□□ 1.87
CLK3-202ENST00000395066 NRXN1Q9ULB1 1477 aa26.71■■□□□ 1.87
CLK3-202ENST00000395066 POLR3AO14802 1390 aaPredicted RBP26.69■■□□□ 1.86
CLK3-202ENST00000395066 TNNQ9UQP3 1299 aa26.69■■□□□ 1.86
CLK3-202ENST00000395066 NPATQ14207 1427 aa26.68■■□□□ 1.86
CLK3-202ENST00000395066 BCL2L13Q9BXK5 485 aa26.68■■□□□ 1.86
CLK3-202ENST00000395066 ADGRB3O60242 1522 aa26.68■■□□□ 1.86
CLK3-202ENST00000395066 SLC24A1O60721 1099 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms