RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PRXQ9BXM0 1461 aa11.01□□□□□ -0.65
LIMS1-203ENST00000393310 MLH3Q9UHC1 1453 aa11.01□□□□□ -0.65
LIMS1-203ENST00000393310 AFF2P51816 1311 aa11.01□□□□□ -0.65
LIMS1-203ENST00000393310 RPGRIP1LQ68CZ1 1315 aa11.01□□□□□ -0.65
LIMS1-203ENST00000393310 FKBP8Q14318 412 aa11.01□□□□□ -0.65
LIMS1-203ENST00000393310 RIMS1Q86UR5 1692 aaKnown RBP11.01□□□□□ -0.65
LIMS1-203ENST00000393310 SPON1Q9HCB6 807 aa11□□□□□ -0.65
LIMS1-203ENST00000393310 TMEM94Q12767 1356 aa11□□□□□ -0.65
LIMS1-203ENST00000393310 SHANK2Q9UPX8 1470 aa11□□□□□ -0.65
LIMS1-203ENST00000393310 ARHGEF40Q8TER5 1519 aa11□□□□□ -0.65
LIMS1-203ENST00000393310 YY1P25490 414 aa11□□□□□ -0.65
LIMS1-203ENST00000393310 RGL3Q3MIN7 710 aa11□□□□□ -0.65
LIMS1-203ENST00000393310 PLA2R1Q13018 1463 aa10.99□□□□□ -0.65
LIMS1-203ENST00000393310 KIF21BO75037 1637 aa10.99□□□□□ -0.65
LIMS1-203ENST00000393310 DHX57Q6P158 1386 aaKnown RBP10.99□□□□□ -0.65
LIMS1-203ENST00000393310 NCOA1Q15788 1441 aa10.98□□□□□ -0.65
LIMS1-203ENST00000393310 CDCA8Q53HL2 280 aa10.97□□□□□ -0.65
LIMS1-203ENST00000393310 CDCA7Q9BWT1 371 aaPredicted RBP10.97□□□□□ -0.65
LIMS1-203ENST00000393310 AGLP35573 1532 aa10.97□□□□□ -0.65
LIMS1-203ENST00000393310 ZBTB22O15209 634 aa10.97□□□□□ -0.65
LIMS1-203ENST00000393310 STRN4Q9NRL3 753 aa10.96□□□□□ -0.65
LIMS1-203ENST00000393310 HDGFL2Q7Z4V5 671 aaPredicted RBP10.96□□□□□ -0.65
LIMS1-203ENST00000393310 NLRP13Q86W25 1043 aa10.96□□□□□ -0.65
LIMS1-203ENST00000393310 FAM196AQ6ZSG2 479 aa10.96□□□□□ -0.66
LIMS1-203ENST00000393310 NAP1L5Q96NT1 182 aaPredicted RBP10.95□□□□□ -0.66
LIMS1-203ENST00000393310 KRT27Q7Z3Y8 459 aa10.95□□□□□ -0.66
LIMS1-203ENST00000393310 BEGAINQ9BUH8 593 aa10.95□□□□□ -0.66
LIMS1-203ENST00000393310 TAF7LQ5H9L4 462 aa10.95□□□□□ -0.66
LIMS1-203ENST00000393310 SENP3-EIF4A1A0A087X0R7 540 aa10.94□□□□□ -0.66
LIMS1-203ENST00000393310 SCAF11Q99590 1463 aaKnown RBP10.94□□□□□ -0.66
LIMS1-203ENST00000393310 KDM5DQ9BY66 1539 aa10.94□□□□□ -0.66
LIMS1-203ENST00000393310 SETD5Q9C0A6 1442 aa10.93□□□□□ -0.66
LIMS1-203ENST00000393310 NUTM2FA1L443 756 aa10.93□□□□□ -0.66
LIMS1-203ENST00000393310 PIK3R4Q99570 1358 aa10.93□□□□□ -0.66
LIMS1-203ENST00000393310 GRIN3BO60391 1043 aa10.92□□□□□ -0.66
LIMS1-203ENST00000393310 UGGT1Q9NYU2 1555 aa10.92□□□□□ -0.66
LIMS1-203ENST00000393310 APBA3O96018 575 aa10.91□□□□□ -0.66
LIMS1-203ENST00000393310 KRT28Q7Z3Y7 464 aa10.91□□□□□ -0.66
LIMS1-203ENST00000393310 MADDQ8WXG6 1647 aa10.91□□□□□ -0.66
LIMS1-203ENST00000393310 NUP153P49790 1475 aaKnown RBP10.91□□□□□ -0.66
LIMS1-203ENST00000393310 ANKRD30BQ9BXX2 1392 aa10.91□□□□□ -0.66
LIMS1-203ENST00000393310 ILDR2Q71H61 639 aa10.91□□□□□ -0.66
LIMS1-203ENST00000393310 CAMSAP1Q5T5Y3 1602 aa10.9□□□□□ -0.66
LIMS1-203ENST00000393310 PHF8Q9UPP1 1060 aa10.9□□□□□ -0.66
LIMS1-203ENST00000393310 TOM1L2Q6ZVM7 507 aa10.9□□□□□ -0.66
LIMS1-203ENST00000393310 IDI1Q13907 227 aa10.9□□□□□ -0.67
LIMS1-203ENST00000393310 ARHGEF10O15013 1369 aa10.9□□□□□ -0.67
LIMS1-203ENST00000393310 FAM135BQ49AJ0 1406 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 ERICH6BQ5W0A0 696 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 PMFBP1Q8TBY8 1022 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 EHBP1L1Q8N3D4 1523 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 PTMSP20962 102 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 AIDAQ96BJ3 306 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 KDM2AQ9Y2K7 1162 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 TMEM2Q9UHN6 1383 aa10.89□□□□□ -0.67
LIMS1-203ENST00000393310 COL17A1Q9UMD9 1497 aaPredicted RBP10.88□□□□□ -0.67
LIMS1-203ENST00000393310 ABCA9Q8IUA7 1624 aa10.88□□□□□ -0.67
LIMS1-203ENST00000393310 CDK13Q14004 1512 aaKnown RBP10.88□□□□□ -0.67
LIMS1-203ENST00000393310 USP35Q9P2H5 1018 aa10.88□□□□□ -0.67
LIMS1-203ENST00000393310 TCOF1Q13428 1488 aaKnown RBP10.87□□□□□ -0.67
LIMS1-203ENST00000393310 SAFB2Q14151 953 aaKnown RBP eCLIP10.87□□□□□ -0.67
LIMS1-203ENST00000393310 TMC1Q8TDI8 760 aa10.87□□□□□ -0.67
LIMS1-203ENST00000393310 TTC37Q6PGP7 1564 aa10.87□□□□□ -0.67
LIMS1-203ENST00000393310 FGD6Q6ZV73 1430 aa10.87□□□□□ -0.67
LIMS1-203ENST00000393310 EXOC5O00471 708 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 CTTNBP2Q8WZ74 1663 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 RIMS2Q9UQ26 1411 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 NCLP19338 710 aaKnown RBP10.86□□□□□ -0.67
LIMS1-203ENST00000393310 FLAD1Q8NFF5 587 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 FAM83GA6ND36 823 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 FOXO3O43524 673 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 UNC5CLQ8IV45 518 aa10.86□□□□□ -0.67
LIMS1-203ENST00000393310 SYTL4Q96C24 671 aaPredicted RBP10.86□□□□□ -0.67
LIMS1-203ENST00000393310 MAP3K4Q9Y6R4 1608 aa10.85□□□□□ -0.67
LIMS1-203ENST00000393310 BRD2P25440 801 aaKnown RBP10.85□□□□□ -0.67
LIMS1-203ENST00000393310 NCOA3Q9Y6Q9 1424 aa10.85□□□□□ -0.67
LIMS1-203ENST00000393310 ATP7AQ04656 1500 aa10.85□□□□□ -0.67
LIMS1-203ENST00000393310 ROCK1Q13464 1354 aa10.85□□□□□ -0.67
LIMS1-203ENST00000393310 TERF2IPQ9NYB0 399 aa10.84□□□□□ -0.67
LIMS1-203ENST00000393310 FBXO3Q9UK99 471 aa10.84□□□□□ -0.67
LIMS1-203ENST00000393310 GIGYF1O75420 1035 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-203ENST00000393310 CCDC136Q96JN2 1154 aa10.84□□□□□ -0.67
LIMS1-203ENST00000393310 KCNH5Q8NCM2 988 aa10.84□□□□□ -0.67
LIMS1-203ENST00000393310 RAPGEF4Q8WZA2 1011 aa10.83□□□□□ -0.68
LIMS1-203ENST00000393310 ANKRD50Q9ULJ7 1429 aa10.82□□□□□ -0.68
LIMS1-203ENST00000393310 SEPT12Q8IYM1 358 aa10.82□□□□□ -0.68
LIMS1-203ENST00000393310 UPF1Q92900 1129 aaKnown RBP eCLIP10.82□□□□□ -0.681e-8■■■□□ 16.4
LIMS1-203ENST00000393310 ANO8Q9HCE9 1232 aaPredicted RBP10.82□□□□□ -0.68
LIMS1-203ENST00000393310 HSP90B1P14625 803 aaKnown RBP10.82□□□□□ -0.68
LIMS1-203ENST00000393310 AMPHP49418 695 aa10.82□□□□□ -0.68
LIMS1-203ENST00000393310 KIF13AQ9H1H9 1805 aa10.82□□□□□ -0.68
LIMS1-203ENST00000393310 WDHD1O75717 1129 aaPredicted RBP10.81□□□□□ -0.68
LIMS1-203ENST00000393310 GJD4Q96KN9 370 aaPredicted RBP10.81□□□□□ -0.68
LIMS1-203ENST00000393310 CFAP44Q96MT7 982 aa10.81□□□□□ -0.68
LIMS1-203ENST00000393310 PCGF6Q9BYE7 350 aa10.81□□□□□ -0.68
LIMS1-203ENST00000393310 NLRP2Q9NX02 1062 aa10.81□□□□□ -0.68
LIMS1-203ENST00000393310 ABTB2Q8N961 1025 aa10.81□□□□□ -0.68
LIMS1-203ENST00000393310 ZMYM4Q5VZL5 1548 aa10.81□□□□□ -0.68
LIMS1-203ENST00000393310 PZPP20742 1482 aa10.81□□□□□ -0.68
LIMS1-203ENST00000393310 DDB1Q16531 1140 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms