RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-204	ENST00000366290	WDR62	O43379	1518 aa		13.95	□□□□□ -0.18
YBX3-204	ENST00000366290	PADI6	Q6TGC4	694 aa		13.93	□□□□□ -0.18
YBX3-204	ENST00000366290	PARP9	Q8IXQ6	854 aa		13.93	□□□□□ -0.18
YBX3-204	ENST00000366290	FANCD2	Q9BXW9	1451 aa		13.93	□□□□□ -0.18
YBX3-204	ENST00000366290	PRDM2	Q13029	1718 aa		13.93	□□□□□ -0.18
YBX3-204	ENST00000366290	GTF3C3	Q9Y5Q9	886 aa		13.92	□□□□□ -0.18
YBX3-204	ENST00000366290	TTLL12	Q14166	644 aa	Predicted RBP	13.91	□□□□□ -0.18
YBX3-204	ENST00000366290	RBM27	Q9P2N5	1060 aa	Known RBP	13.91	□□□□□ -0.18
YBX3-204	ENST00000366290	CEP164	Q9UPV0	1460 aa		13.91	□□□□□ -0.18
YBX3-204	ENST00000366290	RABGEF1	Q9UJ41	708 aa		13.9	□□□□□ -0.18
YBX3-204	ENST00000366290	PRSS12	P56730	875 aa		13.88	□□□□□ -0.19
YBX3-204	ENST00000366290	FAM161A	Q3B820	660 aa		13.88	□□□□□ -0.19
YBX3-204	ENST00000366290	TTC13	Q8NBP0	860 aa		13.88	□□□□□ -0.19
YBX3-204	ENST00000366290	IL27	Q8NEV9	243 aa		13.88	□□□□□ -0.19
YBX3-204	ENST00000366290	TRIM6-TRIM34	B2RNG4	842 aa		13.87	□□□□□ -0.19
YBX3-204	ENST00000366290	CDCA7L	Q96GN5	454 aa		13.87	□□□□□ -0.19
YBX3-204	ENST00000366290	DAXX	Q9UER7	740 aa	Predicted RBP	13.87	□□□□□ -0.19
YBX3-204	ENST00000366290	ONECUT3	O60422	494 aa	Predicted RBP	13.86	□□□□□ -0.19
YBX3-204	ENST00000366290	STAC3	Q96MF2	364 aa		13.86	□□□□□ -0.19
YBX3-204	ENST00000366290	PHOX2B	Q99453	314 aa		13.86	□□□□□ -0.19
YBX3-204	ENST00000366290	NBPF3	Q9H094	633 aa		13.86	□□□□□ -0.19
YBX3-204	ENST00000366290	ADGRG1	Q9Y653	693 aa		13.86	□□□□□ -0.19
YBX3-204	ENST00000366290	OAT	P04181	439 aa		13.85	□□□□□ -0.19
YBX3-204	ENST00000366290	MRPL50	Q8N5N7	158 aa	Known RBP	13.85	□□□□□ -0.19
YBX3-204	ENST00000366290	KCTD12	Q96CX2	325 aa	Known RBP	13.85	□□□□□ -0.19
YBX3-204	ENST00000366290	KIAA1468	Q9P260	1216 aa		13.85	□□□□□ -0.19
YBX3-204	ENST00000366290	TSKS	Q9UJT2	592 aa		13.85	□□□□□ -0.19
YBX3-204	ENST00000366290	METTL3	Q86U44	580 aa	Known RBP	13.84	□□□□□ -0.19
YBX3-204	ENST00000366290	FAM117A	Q9C073	453 aa		13.84	□□□□□ -0.19
YBX3-204	ENST00000366290	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.83	□□□□□ -0.2
YBX3-204	ENST00000366290	REPIN1	Q9BWE0	567 aa	Known RBP	13.83	□□□□□ -0.2
YBX3-204	ENST00000366290	PXYLP1	Q8TE99	480 aa		13.82	□□□□□ -0.2
YBX3-204	ENST00000366290	CLCN1	P35523	988 aa		13.81	□□□□□ -0.2
YBX3-204	ENST00000366290	MDM2	Q00987	491 aa	Predicted RBP	13.81	□□□□□ -0.2
YBX3-204	ENST00000366290	TMUB1	Q9BVT8	246 aa		13.81	□□□□□ -0.2
YBX3-204	ENST00000366290	FAM198A	Q9UFP1	575 aa		13.81	□□□□□ -0.2
YBX3-204	ENST00000366290	URB2	Q14146	1524 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-204	ENST00000366290	DDRGK1	Q96HY6	314 aa		13.8	□□□□□ -0.2
YBX3-204	ENST00000366290	GPCPD1	Q9NPB8	672 aa		13.79	□□□□□ -0.2
YBX3-204	ENST00000366290	NLRP7	Q8WX94	980 aa		13.78	□□□□□ -0.2
YBX3-204	ENST00000366290	HCST	Q9UBK5	93 aa		13.78	□□□□□ -0.2
YBX3-204	ENST00000366290	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-204	ENST00000366290	PLEKHG3	A1L390	1219 aa		13.77	□□□□□ -0.21
YBX3-204	ENST00000366290	LAPTM4B	Q86VI4	370 aa		13.77	□□□□□ -0.21
YBX3-204	ENST00000366290	RBM46	Q8TBY0	533 aa	Known RBP	13.77	□□□□□ -0.21
YBX3-204	ENST00000366290	WNT2B	Q93097	391 aa		13.77	□□□□□ -0.21
YBX3-204	ENST00000366290	MS4A1	P11836	297 aa		13.76	□□□□□ -0.21
YBX3-204	ENST00000366290	THSD4	Q6ZMP0	1018 aa		13.76	□□□□□ -0.21
YBX3-204	ENST00000366290	GOLGA8CP	A6NN73	597 aa		13.75	□□□□□ -0.21
YBX3-204	ENST00000366290	C3orf80	F5H4A9	247 aa		13.75	□□□□□ -0.21
YBX3-204	ENST00000366290	PACS2	Q86VP3	889 aa		13.73	□□□□□ -0.21
YBX3-204	ENST00000366290	ZFR	Q96KR1	1074 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-204	ENST00000366290	ABCC8	Q09428	1581 aa		13.72	□□□□□ -0.21
YBX3-204	ENST00000366290	FAM98C	Q17RN3	349 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-204	ENST00000366290	NBPF26	B4DH59	902 aa		13.71	□□□□□ -0.21
YBX3-204	ENST00000366290	SSTR3	P32745	418 aa	Predicted RBP	13.71	□□□□□ -0.21
YBX3-204	ENST00000366290	EYA1	Q99502	592 aa		13.71	□□□□□ -0.21
YBX3-204	ENST00000366290	TOPBP1	Q92547	1522 aa		13.7	□□□□□ -0.22
YBX3-204	ENST00000366290	NUDT18	Q6ZVK8	323 aa		13.7	□□□□□ -0.22
YBX3-204	ENST00000366290	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.7	□□□□□ -0.22
YBX3-204	ENST00000366290	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.69	□□□□□ -0.22
YBX3-204	ENST00000366290	SUPT5H	O00267	1087 aa	Known RBP	13.69	□□□□□ -0.22
YBX3-204	ENST00000366290	PTPN5	P54829	565 aa		13.69	□□□□□ -0.22
YBX3-204	ENST00000366290	TATDN2	Q93075	761 aa		13.69	□□□□□ -0.22
YBX3-204	ENST00000366290	DNMBP	Q6XZF7	1577 aa		13.69	□□□□□ -0.22
YBX3-204	ENST00000366290	RCCD1	A6NED2	376 aa		13.68	□□□□□ -0.22
YBX3-204	ENST00000366290	SMAP	O00193	183 aa		13.68	□□□□□ -0.22
YBX3-204	ENST00000366290	ANKK1	Q8NFD2	765 aa		13.68	□□□□□ -0.22
YBX3-204	ENST00000366290	PNMA3	Q9UL41	463 aa		13.68	□□□□□ -0.22
YBX3-204	ENST00000366290	TIMELESS	Q9UNS1	1208 aa		13.68	□□□□□ -0.22
YBX3-204	ENST00000366290	BCAM	P50895	628 aa		13.67	□□□□□ -0.22
YBX3-204	ENST00000366290	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.66	□□□□□ -0.22
YBX3-204	ENST00000366290	SOWAHB	A6NEL2	793 aa		13.66	□□□□□ -0.22
YBX3-204	ENST00000366290	IFT140	Q96RY7	1462 aa		13.65	□□□□□ -0.22
YBX3-204	ENST00000366290	DNAJB2	P25686	324 aa		13.63	□□□□□ -0.23
YBX3-204	ENST00000366290	BEGAIN	Q9BUH8	593 aa		13.63	□□□□□ -0.23
YBX3-204	ENST00000366290	ERICH6	Q7L0X2	663 aa		13.61	□□□□□ -0.23
YBX3-204	ENST00000366290	GOPC	Q9HD26	462 aa		13.61	□□□□□ -0.23
YBX3-204	ENST00000366290	TMEM134	Q9H6X4	195 aa		13.59	□□□□□ -0.23
YBX3-204	ENST00000366290	TARBP1	Q13395	1621 aa	Known RBP	13.59	□□□□□ -0.23
YBX3-204	ENST00000366290	RIMBP3C	A6NJZ7	1639 aa		13.58	□□□□□ -0.24
YBX3-204	ENST00000366290	RIMBP3B	A6NNM3	1639 aa		13.58	□□□□□ -0.24
YBX3-204	ENST00000366290	RIMBP3	Q9UFD9	1639 aa		13.58	□□□□□ -0.24
YBX3-204	ENST00000366290	LRCH3	Q96II8	777 aa		13.58	□□□□□ -0.24
YBX3-204	ENST00000366290	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.58	□□□□□ -0.24
YBX3-204	ENST00000366290	POLA1	P09884	1462 aa	Predicted RBP	13.58	□□□□□ -0.24
YBX3-204	ENST00000366290	SH3D19	Q5HYK7	790 aa		13.57	□□□□□ -0.24
YBX3-204	ENST00000366290	SAMD7	Q7Z3H4	446 aa		13.57	□□□□□ -0.24
YBX3-204	ENST00000366290	CUX1	P39880	1505 aa		13.56	□□□□□ -0.24
YBX3-204	ENST00000366290	C14orf37	Q86TY3	774 aa		13.56	□□□□□ -0.24
YBX3-204	ENST00000366290	RSPH6A	Q9H0K4	717 aa		13.56	□□□□□ -0.24
YBX3-204	ENST00000366290	WBP1L	Q9NX94	342 aa		13.56	□□□□□ -0.24
YBX3-204	ENST00000366290	PLA2G2E	Q9NZK7	142 aa		13.56	□□□□□ -0.24
YBX3-204	ENST00000366290	SULF1	Q8IWU6	871 aa		13.55	□□□□□ -0.24
YBX3-204	ENST00000366290	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.54	□□□□□ -0.24
YBX3-204	ENST00000366290	ARHGEF11	O15085	1522 aa		13.54	□□□□□ -0.24
YBX3-204	ENST00000366290	DDX11L8	A8MPP1	907 aa		13.53	□□□□□ -0.24
YBX3-204	ENST00000366290	CD46	P15529	392 aa		13.53	□□□□□ -0.24
YBX3-204	ENST00000366290	HPS5	Q9UPZ3	1129 aa		13.53	□□□□□ -0.24
YBX3-204	ENST00000366290	TSR3	Q9UJK0	312 aa	Known RBP	13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms