RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 PLEKHG1Q9ULL1 1385 aa20.78■□□□□ 0.92
TNFRSF1A-202ENST00000366159 KCNA6P17658 529 aa20.78■□□□□ 0.92
TNFRSF1A-202ENST00000366159 PIP4K2BP78356 416 aa20.78■□□□□ 0.92
TNFRSF1A-202ENST00000366159 HFM1A2PYH4 1435 aa20.76■□□□□ 0.91
TNFRSF1A-202ENST00000366159 NWD1Q149M9 1564 aa20.75■□□□□ 0.91
TNFRSF1A-202ENST00000366159 HSPA1LP34931 641 aa20.75■□□□□ 0.91
TNFRSF1A-202ENST00000366159 HDGFP51858 240 aaKnown RBP20.75■□□□□ 0.91
TNFRSF1A-202ENST00000366159 SPHKAPQ2M3C7 1700 aa20.73■□□□□ 0.91
TNFRSF1A-202ENST00000366159 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.73■□□□□ 0.91
TNFRSF1A-202ENST00000366159 SCAF1Q9H7N4 1312 aaKnown RBP20.72■□□□□ 0.91
TNFRSF1A-202ENST00000366159 DISP3Q9P2K9 1392 aa20.72■□□□□ 0.91
TNFRSF1A-202ENST00000366159 TMEM94Q12767 1356 aa20.71■□□□□ 0.91
TNFRSF1A-202ENST00000366159 CHGAP10645 457 aaKnown RBP20.71■□□□□ 0.91
TNFRSF1A-202ENST00000366159 TBX22Q9Y458 520 aa20.71■□□□□ 0.91
TNFRSF1A-202ENST00000366159 ADAMTS13Q76LX8 1427 aa20.71■□□□□ 0.91
TNFRSF1A-202ENST00000366159 CHD2O14647 1828 aaKnown RBP20.71■□□□□ 0.91
TNFRSF1A-202ENST00000366159 NKTRP30414 1462 aaKnown RBP20.7■□□□□ 0.9
TNFRSF1A-202ENST00000366159 PPP1R15AO75807 674 aaPredicted RBP20.69■□□□□ 0.9
TNFRSF1A-202ENST00000366159 TRPM2O94759 1503 aa20.67■□□□□ 0.9
TNFRSF1A-202ENST00000366159 NUTM2DQ5VT03 806 aaPredicted RBP20.66■□□□□ 0.9
TNFRSF1A-202ENST00000366159 PROSER2Q86WR7 435 aaPredicted RBP20.66■□□□□ 0.9
TNFRSF1A-202ENST00000366159 BCANQ96GW7 911 aa20.66■□□□□ 0.9
TNFRSF1A-202ENST00000366159 DIP2AQ14689 1571 aa20.66■□□□□ 0.9
TNFRSF1A-202ENST00000366159 CLTCL1P53675 1640 aa20.66■□□□□ 0.9
TNFRSF1A-202ENST00000366159 ILDR2Q71H61 639 aa20.65■□□□□ 0.9
TNFRSF1A-202ENST00000366159 SENP3Q9H4L4 574 aaPredicted RBP20.65■□□□□ 0.9
TNFRSF1A-202ENST00000366159 PIK3R4Q99570 1358 aa20.64■□□□□ 0.89
TNFRSF1A-202ENST00000366159 RBM33Q96EV2 1170 aaKnown RBP20.63■□□□□ 0.89
TNFRSF1A-202ENST00000366159 FAM135BQ49AJ0 1406 aa20.63■□□□□ 0.89
TNFRSF1A-202ENST00000366159 NRXN3Q9Y4C0 1643 aa20.62■□□□□ 0.89
TNFRSF1A-202ENST00000366159 SETBP1Q9Y6X0 1596 aa20.6■□□□□ 0.89
TNFRSF1A-202ENST00000366159 NCOA3Q9Y6Q9 1424 aa20.6■□□□□ 0.89
TNFRSF1A-202ENST00000366159 NEXMIFQ5QGS0 1516 aa20.6■□□□□ 0.89
TNFRSF1A-202ENST00000366159 TRIM52Q96A61 297 aa20.59■□□□□ 0.89
TNFRSF1A-202ENST00000366159 PTPRUQ92729 1446 aa20.59■□□□□ 0.89
TNFRSF1A-202ENST00000366159 SLC4A1APQ9BWU0 796 aaKnown RBP20.57■□□□□ 0.88
TNFRSF1A-202ENST00000366159 MED1Q15648 1581 aaPredicted RBP20.57■□□□□ 0.88
TNFRSF1A-202ENST00000366159 KIF1BO60333 1816 aa20.56■□□□□ 0.88
TNFRSF1A-202ENST00000366159 MSH6P52701 1360 aa20.56■□□□□ 0.88
TNFRSF1A-202ENST00000366159 ZNF326Q5BKZ1 582 aaKnown RBP20.55■□□□□ 0.88
TNFRSF1A-202ENST00000366159 ROBO1Q9Y6N7 1651 aa20.54■□□□□ 0.88
TNFRSF1A-202ENST00000366159 AMOTL2Q9Y2J4 779 aa20.53■□□□□ 0.88
TNFRSF1A-202ENST00000366159 XRN1Q8IZH2 1706 aaKnown RBP20.53■□□□□ 0.88
TNFRSF1A-202ENST00000366159 SLAIN2Q9P270 581 aa20.53■□□□□ 0.88
TNFRSF1A-202ENST00000366159 METP08581 1390 aa20.51■□□□□ 0.87
TNFRSF1A-202ENST00000366159 FOXD1Q16676 465 aa20.5■□□□□ 0.87
TNFRSF1A-202ENST00000366159 RPGRIP1LQ68CZ1 1315 aa20.49■□□□□ 0.87
TNFRSF1A-202ENST00000366159 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.49■□□□□ 0.87
TNFRSF1A-202ENST00000366159 C19orf44Q9H6X5 657 aa20.49■□□□□ 0.87
TNFRSF1A-202ENST00000366159 MPHOSPH9Q99550 1183 aa20.48■□□□□ 0.87
TNFRSF1A-202ENST00000366159 SETD1AO15047 1707 aaKnown RBP20.46■□□□□ 0.87
TNFRSF1A-202ENST00000366159 SOCS7O14512 581 aa20.46■□□□□ 0.87
TNFRSF1A-202ENST00000366159 VGFO15240 615 aaPredicted RBP20.46■□□□□ 0.87
TNFRSF1A-202ENST00000366159 PPLO60437 1756 aa20.45■□□□□ 0.86
TNFRSF1A-202ENST00000366159 SETD5Q9C0A6 1442 aa20.45■□□□□ 0.86
TNFRSF1A-202ENST00000366159 ACIN1Q9UKV3 1341 aaKnown RBP20.45■□□□□ 0.86
TNFRSF1A-202ENST00000366159 CADPS2Q86UW7 1296 aa20.44■□□□□ 0.86
TNFRSF1A-202ENST00000366159 DCCP43146 1447 aa20.43■□□□□ 0.86
TNFRSF1A-202ENST00000366159 SPATA31E1Q6ZUB1 1445 aa20.43■□□□□ 0.86
TNFRSF1A-202ENST00000366159 C14orf37Q86TY3 774 aa20.41■□□□□ 0.86
TNFRSF1A-202ENST00000366159 CCDC144AA2RUR9 1427 aa20.41■□□□□ 0.86
TNFRSF1A-202ENST00000366159 PRAG1Q86YV5 1406 aa20.41■□□□□ 0.86
TNFRSF1A-202ENST00000366159 ATF3P18847 181 aa20.4■□□□□ 0.86
TNFRSF1A-202ENST00000366159 PHLPP1O60346 1717 aa20.4■□□□□ 0.86
TNFRSF1A-202ENST00000366159 COL16A1Q07092 1604 aaPredicted RBP20.39■□□□□ 0.85
TNFRSF1A-202ENST00000366159 RGS17Q9UGC6 210 aaPredicted RBP20.37■□□□□ 0.85
TNFRSF1A-202ENST00000366159 AHDC1Q5TGY3 1603 aaPredicted RBP20.37■□□□□ 0.85
TNFRSF1A-202ENST00000366159 IFT172Q9UG01 1749 aa20.37■□□□□ 0.85
TNFRSF1A-202ENST00000366159 PTCH1Q13635 1447 aa20.36■□□□□ 0.85
TNFRSF1A-202ENST00000366159 ADGRL3Q9HAR2 1447 aa20.36■□□□□ 0.85
TNFRSF1A-202ENST00000366159 RAB3GAP2Q9H2M9 1393 aa20.36■□□□□ 0.85
TNFRSF1A-202ENST00000366159 MST1RQ04912 1400 aa20.35■□□□□ 0.85
TNFRSF1A-202ENST00000366159 NALCNQ8IZF0 1738 aa20.35■□□□□ 0.85
TNFRSF1A-202ENST00000366159 ADGRF5Q8IZF2 1346 aa20.34■□□□□ 0.85
TNFRSF1A-202ENST00000366159 BRINP3Q76B58 766 aa20.34■□□□□ 0.85
TNFRSF1A-202ENST00000366159 ANKRD30BQ9BXX2 1392 aa20.34■□□□□ 0.85
TNFRSF1A-202ENST00000366159 ROBO2Q9HCK4 1378 aa20.34■□□□□ 0.85
TNFRSF1A-202ENST00000366159 JCADQ9P266 1359 aa20.33■□□□□ 0.84
TNFRSF1A-202ENST00000366159 RGL3Q3MIN7 710 aa20.32■□□□□ 0.84
TNFRSF1A-202ENST00000366159 ASXL1Q8IXJ9 1541 aa20.3■□□□□ 0.84
TNFRSF1A-202ENST00000366159 HRCP23327 699 aa20.29■□□□□ 0.84
TNFRSF1A-202ENST00000366159 PIK3C2GO75747 1445 aa20.28■□□□□ 0.84
TNFRSF1A-202ENST00000366159 NHSL1Q5SYE7 1610 aa20.27■□□□□ 0.84
TNFRSF1A-202ENST00000366159 TECPR2O15040 1411 aa20.27■□□□□ 0.84
TNFRSF1A-202ENST00000366159 NRXN1Q9ULB1 1477 aa20.26■□□□□ 0.83
TNFRSF1A-202ENST00000366159 SHPRHQ149N8 1683 aa20.26■□□□□ 0.83
TNFRSF1A-202ENST00000366159 C1orf167Q5SNV9 1468 aa20.25■□□□□ 0.83
TNFRSF1A-202ENST00000366159 SPATA31A6Q5VVP1 1343 aa20.25■□□□□ 0.83
TNFRSF1A-202ENST00000366159 LRPPRCP42704 1394 aaKnown RBP20.24■□□□□ 0.83
TNFRSF1A-202ENST00000366159 LRP6O75581 1613 aa20.23■□□□□ 0.83
TNFRSF1A-202ENST00000366159 LAMC1P11047 1609 aa20.23■□□□□ 0.83
TNFRSF1A-202ENST00000366159 ABCC11Q96J66 1382 aa20.23■□□□□ 0.83
TNFRSF1A-202ENST00000366159 MYOM2P54296 1465 aa20.22■□□□□ 0.83
TNFRSF1A-202ENST00000366159 POTEAQ6S8J7 498 aa20.22■□□□□ 0.83
TNFRSF1A-202ENST00000366159 C14orf93Q9H972 538 aaKnown RBP20.21■□□□□ 0.83
TNFRSF1A-202ENST00000366159 KNDC1Q76NI1 1749 aa20.21■□□□□ 0.83
TNFRSF1A-202ENST00000366159 TMEM132EQ6IEE7 984 aa20.2■□□□□ 0.82
TNFRSF1A-202ENST00000366159 CDC42BPGQ6DT37 1551 aa20.19■□□□□ 0.82
TNFRSF1A-202ENST00000366159 DDX17Q92841 729 aaKnown RBP20.19■□□□□ 0.82
TNFRSF1A-202ENST00000366159 YTHDC2Q9H6S0 1430 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms