RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 PBX2P40425 430 aa10.85□□□□□ -0.67
RNU4-39P-201ENST00000362455 CLK2P49760 499 aaKnown RBP10.85□□□□□ -0.67
RNU4-39P-201ENST00000362455 DIXDC1Q155Q3 683 aa10.85□□□□□ -0.67
RNU4-39P-201ENST00000362455 SULF1Q8IWU6 871 aa10.85□□□□□ -0.67
RNU4-39P-201ENST00000362455 ARXQ96QS3 562 aa10.85□□□□□ -0.67
RNU4-39P-201ENST00000362455 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.85□□□□□ -0.67
RNU4-39P-201ENST00000362455 DDX11L8A8MPP1 907 aa10.84□□□□□ -0.67
RNU4-39P-201ENST00000362455 ZBED2Q9BTP6 218 aa10.84□□□□□ -0.67
RNU4-39P-201ENST00000362455 PSEN2P49810 448 aa10.83□□□□□ -0.68
RNU4-39P-201ENST00000362455 SPIRE2Q8WWL2 714 aa10.83□□□□□ -0.68
RNU4-39P-201ENST00000362455 KIAA1468Q9P260 1216 aa10.83□□□□□ -0.68
RNU4-39P-201ENST00000362455 MCM6Q14566 821 aa10.81□□□□□ -0.68
RNU4-39P-201ENST00000362455 LIMD1Q9UGP4 676 aa10.81□□□□□ -0.68
RNU4-39P-201ENST00000362455 POTEB3A0JP26 581 aa10.79□□□□□ -0.68
RNU4-39P-201ENST00000362455 POTEBQ6S5H4 581 aa10.79□□□□□ -0.68
RNU4-39P-201ENST00000362455 POTEEQ6S8J3 1075 aa10.79□□□□□ -0.68
RNU4-39P-201ENST00000362455 RIC3Q7Z5B4 369 aa10.79□□□□□ -0.68
RNU4-39P-201ENST00000362455 NUTM1Q86Y26 1132 aa10.79□□□□□ -0.68
RNU4-39P-201ENST00000362455 AXIN2Q9Y2T1 843 aa10.79□□□□□ -0.68
RNU4-39P-201ENST00000362455 RDH13Q8NBN7 331 aa10.78□□□□□ -0.68
RNU4-39P-201ENST00000362455 UBTFP17480 764 aaKnown RBP10.77□□□□□ -0.69
RNU4-39P-201ENST00000362455 SLC4A5Q9BY07 1137 aa10.77□□□□□ -0.69
RNU4-39P-201ENST00000362455 MOXD2PA6NHM9 499 aa10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 SPTLC1O15269 473 aa10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 RFC5P40937 340 aa10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 DMRTA1Q5VZB9 504 aa10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 FBXO31Q5XUX0 539 aaPredicted RBP10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 RSBN1LQ6PCB5 846 aaPredicted RBP10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 CLUAP1Q96AJ1 413 aa10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 RABGEF1Q9UJ41 708 aa10.76□□□□□ -0.69
RNU4-39P-201ENST00000362455 SEPT9Q9UHD8 586 aaPredicted RBP10.75□□□□□ -0.69
RNU4-39P-201ENST00000362455 A6NJR5 290 aa10.74□□□□□ -0.69
RNU4-39P-201ENST00000362455 TUSC1Q2TAM9 212 aa10.74□□□□□ -0.69
RNU4-39P-201ENST00000362455 SWT1Q5T5J6 900 aaKnown RBP10.74□□□□□ -0.69
RNU4-39P-201ENST00000362455 HOMEZQ8IX15 550 aa10.74□□□□□ -0.69
RNU4-39P-201ENST00000362455 NDUFV2P19404 249 aa10.73□□□□□ -0.69
RNU4-39P-201ENST00000362455 CSPP1Q1MSJ5 1256 aa10.73□□□□□ -0.69
RNU4-39P-201ENST00000362455 PPP2R2DQ66LE6 453 aa10.73□□□□□ -0.69
RNU4-39P-201ENST00000362455 KDM4AO75164 1064 aa10.72□□□□□ -0.69
RNU4-39P-201ENST00000362455 SPDYE5A6NIY4 337 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 GJA5P36382 358 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 GCGRP47871 477 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 RSPH4AQ5TD94 716 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 BANK1Q8NDB2 785 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 C1orf115Q9H7X2 142 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 VPS9D1Q9Y2B5 631 aa10.71□□□□□ -0.69
RNU4-39P-201ENST00000362455 ARID3CA6NKF2 412 aa10.7□□□□□ -0.7
RNU4-39P-201ENST00000362455 TK2O00142 265 aa10.7□□□□□ -0.7
RNU4-39P-201ENST00000362455 SLC10A3P09131 477 aa10.7□□□□□ -0.7
RNU4-39P-201ENST00000362455 FAM98CQ17RN3 349 aaKnown RBP10.7□□□□□ -0.7
RNU4-39P-201ENST00000362455 LSM11P83369 360 aaKnown RBP eCLIP10.69□□□□□ -0.7
RNU4-39P-201ENST00000362455 QPCTQ16769 361 aa10.69□□□□□ -0.7
RNU4-39P-201ENST00000362455 TMEM259Q4ZIN3 620 aa10.69□□□□□ -0.7
RNU4-39P-201ENST00000362455 POM121Q96HA1 1249 aa10.69□□□□□ -0.7
RNU4-39P-201ENST00000362455 SNRKQ9NRH2 765 aa10.69□□□□□ -0.7
RNU4-39P-201ENST00000362455 PCDHB15Q9Y5E8 787 aa10.69□□□□□ -0.7
RNU4-39P-201ENST00000362455 TRAK2O60296 914 aa10.68□□□□□ -0.7
RNU4-39P-201ENST00000362455 LILRB3O75022 631 aa10.68□□□□□ -0.7
RNU4-39P-201ENST00000362455 USP46P62068 366 aa10.68□□□□□ -0.7
RNU4-39P-201ENST00000362455 APBB1O00213 710 aa10.67□□□□□ -0.7
RNU4-39P-201ENST00000362455 HOXA2O43364 376 aa10.67□□□□□ -0.7
RNU4-39P-201ENST00000362455 HDGFP51858 240 aaKnown RBP10.67□□□□□ -0.7
RNU4-39P-201ENST00000362455 RAD21O60216 631 aa10.66□□□□□ -0.7
RNU4-39P-201ENST00000362455 NBPF3Q9H094 633 aa10.66□□□□□ -0.7
RNU4-39P-201ENST00000362455 RTL5Q5HYW3 569 aaPredicted RBP10.65□□□□□ -0.7
RNU4-39P-201ENST00000362455 ADGRD1Q6QNK2 874 aa10.65□□□□□ -0.7
RNU4-39P-201ENST00000362455 POTEGQ6S5H5 508 aa10.65□□□□□ -0.7
RNU4-39P-201ENST00000362455 ANKRD13DQ6ZTN6 518 aa10.65□□□□□ -0.7
RNU4-39P-201ENST00000362455 PROSER2Q86WR7 435 aaPredicted RBP10.65□□□□□ -0.7
RNU4-39P-201ENST00000362455 CABLES1Q8TDN4 633 aa10.65□□□□□ -0.7
RNU4-39P-201ENST00000362455 NUTM2BA6NNL0 878 aaPredicted RBP10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 NUTM2EB1AL46 878 aaPredicted RBP10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 FDX1P10109 184 aa10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 SLC4A3P48751 1232 aa10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 NUTM2DQ5VT03 806 aaPredicted RBP10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 PRPF38BQ5VTL8 546 aaKnown RBP10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 SAMD7Q7Z3H4 446 aa10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 LAPTM4BQ86VI4 370 aa10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 NUTM2AQ8IVF1 878 aaPredicted RBP10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 SLF2Q8IX21 1173 aa10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 ARID3AQ99856 593 aa10.64□□□□□ -0.71
RNU4-39P-201ENST00000362455 POTEMA6NI47 508 aa10.63□□□□□ -0.71
RNU4-39P-201ENST00000362455 HLA-CQ95604 372 aa10.63□□□□□ -0.71
RNU4-39P-201ENST00000362455 COG6Q9Y2V7 657 aa10.63□□□□□ -0.71
RNU4-39P-201ENST00000362455 BHMG1C9JSJ3 638 aaPredicted RBP10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 AP1G2O75843 785 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 HRCP23327 699 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 GUCA2AQ02747 115 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 FNBP4Q8N3X1 1017 aaPredicted RBP10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 MTMR14Q8NCE2 650 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 STAC3Q96MF2 364 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 ZBTB3Q9H5J0 574 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 PCDHGC3Q9UN70 934 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 ABCC9O60706 1549 aa10.62□□□□□ -0.71
RNU4-39P-201ENST00000362455 RNF40O75150 1001 aa10.6□□□□□ -0.71
RNU4-39P-201ENST00000362455 CFHP08603 1231 aa10.6□□□□□ -0.71
RNU4-39P-201ENST00000362455 MRPL50Q8N5N7 158 aaKnown RBP10.6□□□□□ -0.71
RNU4-39P-201ENST00000362455 ZFRQ96KR1 1074 aaKnown RBP10.6□□□□□ -0.71
RNU4-39P-201ENST00000362455 FUT2Q10981 343 aa10.59□□□□□ -0.71
RNU4-39P-201ENST00000362455 CDAN1Q8IWY9 1227 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms