RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 MYO3AQ8NEV4 1616 aa31.09■■■□□ 2.57
HOXA4-201ENST00000360046 KDM5AP29375 1690 aaKnown RBP31.08■■■□□ 2.57
HOXA4-201ENST00000360046 TRPM1Q7Z4N2 1603 aa31.08■■■□□ 2.57
HOXA4-201ENST00000360046 RALGAPBQ86X10 1494 aa31.08■■■□□ 2.57
HOXA4-201ENST00000360046 UBR1Q8IWV7 1749 aa31.07■■■□□ 2.57
HOXA4-201ENST00000360046 NUTM2DQ5VT03 806 aaPredicted RBP31.06■■■□□ 2.56
HOXA4-201ENST00000360046 ADGRF5Q8IZF2 1346 aa31.04■■■□□ 2.56
HOXA4-201ENST00000360046 SETD1BQ9UPS6 1966 aaKnown RBP31.03■■■□□ 2.56
HOXA4-201ENST00000360046 NRXN1Q9ULB1 1477 aa31.01■■■□□ 2.55
HOXA4-201ENST00000360046 ROCK2O75116 1388 aaKnown RBP31■■■□□ 2.55
HOXA4-201ENST00000360046 VGFO15240 615 aaPredicted RBP31■■■□□ 2.55
HOXA4-201ENST00000360046 THEMISQ8N1K5 641 aaPredicted RBP30.98■■■□□ 2.55
HOXA4-201ENST00000360046 RIMS2Q9UQ26 1411 aa30.98■■■□□ 2.55
HOXA4-201ENST00000360046 CEP170BQ9Y4F5 1589 aaPredicted RBP30.98■■■□□ 2.55
HOXA4-201ENST00000360046 ZNF316A6NFI3 1004 aaPredicted RBP30.96■■■□□ 2.55
HOXA4-201ENST00000360046 KIAA1210Q9ULL0 1709 aa30.96■■■□□ 2.55
HOXA4-201ENST00000360046 PIK3C2GO75747 1445 aa30.96■■■□□ 2.55
HOXA4-201ENST00000360046 ZFYVE9O95405 1425 aa30.95■■■□□ 2.55
HOXA4-201ENST00000360046 CARD11Q9BXL7 1154 aa30.95■■■□□ 2.54
HOXA4-201ENST00000360046 HDGFP51858 240 aaKnown RBP30.94■■■□□ 2.54
HOXA4-201ENST00000360046 SENP3Q9H4L4 574 aaPredicted RBP30.94■■■□□ 2.54
HOXA4-201ENST00000360046 ZNF142P52746 1687 aaPredicted RBP30.93■■■□□ 2.54
HOXA4-201ENST00000360046 NBPF1Q3BBV0 1214 aa30.93■■■□□ 2.54
HOXA4-201ENST00000360046 TMEM2Q9UHN6 1383 aa30.93■■■□□ 2.54
HOXA4-201ENST00000360046 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.92■■■□□ 2.54
HOXA4-201ENST00000360046 EIF4G2P78344 907 aaKnown RBP eCLIP30.91■■■□□ 2.54
HOXA4-201ENST00000360046 LAMC1P11047 1609 aa30.9■■■□□ 2.54
HOXA4-201ENST00000360046 CFAP70Q5T0N1 1121 aa30.9■■■□□ 2.54
HOXA4-201ENST00000360046 GPRASP1Q5JY77 1395 aa30.89■■■□□ 2.54
HOXA4-201ENST00000360046 HIRIP3Q9BW71 556 aaPredicted RBP30.89■■■□□ 2.54
HOXA4-201ENST00000360046 HSPA5P11021 654 aaKnown RBP30.87■■■□□ 2.53
HOXA4-201ENST00000360046 TXNDC2Q86VQ3 553 aa30.87■■■□□ 2.53
HOXA4-201ENST00000360046 EID1Q9Y6B2 187 aa30.87■■■□□ 2.53
HOXA4-201ENST00000360046 USP47Q96K76 1375 aa30.87■■■□□ 2.53
HOXA4-201ENST00000360046 SLIT1O75093 1534 aa30.84■■■□□ 2.53
HOXA4-201ENST00000360046 LTKP29376 864 aa30.84■■■□□ 2.53
HOXA4-201ENST00000360046 BCANQ96GW7 911 aa30.84■■■□□ 2.53
HOXA4-201ENST00000360046 C14orf93Q9H972 538 aaKnown RBP30.83■■■□□ 2.53
HOXA4-201ENST00000360046 ARHGAP23Q9P227 1491 aa30.82■■■□□ 2.52
HOXA4-201ENST00000360046 SETBP1Q9Y6X0 1596 aa30.81■■■□□ 2.52
HOXA4-201ENST00000360046 IQGAP1P46940 1657 aa30.78■■■□□ 2.52
HOXA4-201ENST00000360046 ANKLE2Q86XL3 938 aa30.77■■■□□ 2.52
HOXA4-201ENST00000360046 ALKQ9UM73 1620 aa30.77■■■□□ 2.52
HOXA4-201ENST00000360046 ADGRB1O14514 1584 aa30.75■■■□□ 2.51
HOXA4-201ENST00000360046 SCAF11Q99590 1463 aaKnown RBP30.75■■■□□ 2.51
HOXA4-201ENST00000360046 NRXN3Q9Y4C0 1643 aa30.74■■■□□ 2.51
HOXA4-201ENST00000360046 HSPA2P54652 639 aa30.73■■■□□ 2.51
HOXA4-201ENST00000360046 TMEM132EQ6IEE7 984 aa30.73■■■□□ 2.51
HOXA4-201ENST00000360046 PLEKHG1Q9ULL1 1385 aa30.72■■■□□ 2.51
HOXA4-201ENST00000360046 ST20-MTHFSA0A0A6YYL1 179 aa30.7■■■□□ 2.51
HOXA4-201ENST00000360046 ASXL1Q8IXJ9 1541 aa30.7■■■□□ 2.51
HOXA4-201ENST00000360046 SETD1AO15047 1707 aaKnown RBP30.7■■■□□ 2.5
HOXA4-201ENST00000360046 LMTK3Q96Q04 1460 aa30.68■■■□□ 2.5
HOXA4-201ENST00000360046 EIF3AQ14152 1382 aaKnown RBP30.68■■■□□ 2.5
HOXA4-201ENST00000360046 NCKAP5LQ9HCH0 1330 aa30.67■■■□□ 2.5
HOXA4-201ENST00000360046 SLC26A8Q96RN1 970 aa30.65■■■□□ 2.5
HOXA4-201ENST00000360046 TRAK1Q9UPV9 953 aa30.63■■■□□ 2.49
HOXA4-201ENST00000360046 ADAMTS13Q76LX8 1427 aa30.62■■■□□ 2.49
HOXA4-201ENST00000360046 POLR1AO95602 1720 aaPredicted RBP30.61■■■□□ 2.49
HOXA4-201ENST00000360046 YTHDC2Q9H6S0 1430 aaKnown RBP30.61■■■□□ 2.49
HOXA4-201ENST00000360046 STK26Q9P289 416 aa30.6■■■□□ 2.49
HOXA4-201ENST00000360046 ARHGEF28Q8N1W1 1705 aaKnown RBP30.59■■■□□ 2.49
HOXA4-201ENST00000360046 METP08581 1390 aa30.58■■■□□ 2.49
HOXA4-201ENST00000360046 NPHP4O75161 1426 aaPredicted RBP30.57■■■□□ 2.48
HOXA4-201ENST00000360046 DIP2AQ14689 1571 aa30.56■■■□□ 2.48
HOXA4-201ENST00000360046 TBX22Q9Y458 520 aa30.56■■■□□ 2.48
HOXA4-201ENST00000360046 MED14O60244 1454 aa30.55■■■□□ 2.48
HOXA4-201ENST00000360046 C11orf95C9JLR9 678 aaPredicted RBP30.54■■■□□ 2.48
HOXA4-201ENST00000360046 LRPPRCP42704 1394 aaKnown RBP30.53■■■□□ 2.48
HOXA4-201ENST00000360046 WASHC2AQ641Q2 1341 aa30.53■■■□□ 2.48
HOXA4-201ENST00000360046 TESK2Q96S53 571 aa30.53■■■□□ 2.48
HOXA4-201ENST00000360046 CENPJQ9HC77 1338 aaPredicted RBP30.53■■■□□ 2.48
HOXA4-201ENST00000360046 QRICH2Q9H0J4 1663 aa30.52■■■□□ 2.48
HOXA4-201ENST00000360046 CCDC7Q96M83 1385 aa30.51■■■□□ 2.48
HOXA4-201ENST00000360046 KIF7Q2M1P5 1343 aa30.5■■■□□ 2.47
HOXA4-201ENST00000360046 KNDC1Q76NI1 1749 aa30.48■■■□□ 2.47
HOXA4-201ENST00000360046 DIEXFQ68CQ4 756 aaKnown RBP30.47■■■□□ 2.47
HOXA4-201ENST00000360046 POLR3GLQ9BT43 218 aa30.47■■■□□ 2.47
HOXA4-201ENST00000360046 TMF1P82094 1093 aa30.47■■■□□ 2.47
HOXA4-201ENST00000360046 DLC1Q96QB1 1528 aa30.47■■■□□ 2.47
HOXA4-201ENST00000360046 ABCC11Q96J66 1382 aa30.46■■■□□ 2.47
HOXA4-201ENST00000360046 DDX10Q13206 875 aaKnown RBP30.45■■■□□ 2.47
HOXA4-201ENST00000360046 DISP3Q9P2K9 1392 aa30.45■■■□□ 2.47
HOXA4-201ENST00000360046 PRAM1Q96QH2 718 aa30.44■■■□□ 2.46
HOXA4-201ENST00000360046 POGKQ9P215 609 aa30.44■■■□□ 2.46
HOXA4-201ENST00000360046 SBNO2Q9Y2G9 1366 aa30.43■■■□□ 2.46
HOXA4-201ENST00000360046 SAFB2Q14151 953 aaKnown RBP eCLIP30.43■■■□□ 2.46
HOXA4-201ENST00000360046 AMOTL2Q9Y2J4 779 aa30.43■■■□□ 2.46
HOXA4-201ENST00000360046 CPS1P31327 1500 aa30.42■■■□□ 2.46
HOXA4-201ENST00000360046 TECPR2O15040 1411 aa30.42■■■□□ 2.46
HOXA4-201ENST00000360046 STRCQ7RTU9 1775 aa30.42■■■□□ 2.46
HOXA4-201ENST00000360046 PTPRUQ92729 1446 aa30.41■■■□□ 2.46
HOXA4-201ENST00000360046 SLC24A1O60721 1099 aa30.41■■■□□ 2.46
HOXA4-201ENST00000360046 PIK3R4Q99570 1358 aa30.39■■■□□ 2.46
HOXA4-201ENST00000360046 WAPLQ7Z5K2 1190 aa30.37■■■□□ 2.45
HOXA4-201ENST00000360046 XRN1Q8IZH2 1706 aaKnown RBP30.36■■■□□ 2.45
HOXA4-201ENST00000360046 FAM135BQ49AJ0 1406 aa30.35■■■□□ 2.45
HOXA4-201ENST00000360046 CDCA8Q53HL2 280 aa30.35■■■□□ 2.45
HOXA4-201ENST00000360046 PLEKHH1Q9ULM0 1364 aa30.35■■■□□ 2.45
HOXA4-201ENST00000360046 CHD2O14647 1828 aaKnown RBP30.34■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms