RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 CTDP1Q9Y5B0 961 aaPredicted RBP22.15■■□□□ 1.14
COL18A1-202ENST00000355480 DDX58O95786 925 aaKnown RBP22.14■■□□□ 1.13
COL18A1-202ENST00000355480 RUFY2Q8WXA3 655 aa22.14■■□□□ 1.13
COL18A1-202ENST00000355480 ATP6V1DQ9Y5K8 247 aa22.14■■□□□ 1.13
COL18A1-202ENST00000355480 IFIT2P09913 472 aaKnown RBP22.14■■□□□ 1.13
COL18A1-202ENST00000355480 CPLX2Q6PUV4 134 aaKnown RBP22.14■■□□□ 1.13
COL18A1-202ENST00000355480 APPP05067 770 aa22.14■■□□□ 1.13
COL18A1-202ENST00000355480 TCEAL9Q9UHQ7 104 aa22.13■■□□□ 1.13
COL18A1-202ENST00000355480 RIPK4P57078 832 aa22.13■■□□□ 1.13
COL18A1-202ENST00000355480 DDX11L8A8MPP1 907 aa22.13■■□□□ 1.13
COL18A1-202ENST00000355480 ANO8Q9HCE9 1232 aaPredicted RBP22.13■■□□□ 1.13
COL18A1-202ENST00000355480 FANCD2Q9BXW9 1451 aa22.12■■□□□ 1.13
COL18A1-202ENST00000355480 PRKRIP1Q9H875 184 aaPredicted RBP22.12■■□□□ 1.13
COL18A1-202ENST00000355480 TSR1Q2NL82 804 aaKnown RBP22.12■■□□□ 1.13
COL18A1-202ENST00000355480 FAM161AQ3B820 660 aa22.12■■□□□ 1.13
COL18A1-202ENST00000355480 FBXW7Q969H0 707 aa22.12■■□□□ 1.13
COL18A1-202ENST00000355480 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.12■■□□□ 1.133e-6■□□□□ 8.2
COL18A1-202ENST00000355480 CRBNQ96SW2 442 aa22.12■■□□□ 1.13
COL18A1-202ENST00000355480 ZKSCAN1P17029 563 aaPredicted RBP22.1■■□□□ 1.13
COL18A1-202ENST00000355480 FKBP5Q13451 457 aaPredicted RBP22.1■■□□□ 1.13
COL18A1-202ENST00000355480 RRP1P56182 461 aaKnown RBP22.1■■□□□ 1.13
COL18A1-202ENST00000355480 FAM69CQ0P6D2 419 aa22.1■■□□□ 1.13
COL18A1-202ENST00000355480 TRIM29Q14134 588 aa22.1■■□□□ 1.13
COL18A1-202ENST00000355480 EXOC6Q8TAG9 804 aa22.1■■□□□ 1.13
COL18A1-202ENST00000355480 API5Q9BZZ5 524 aaKnown RBP22.09■■□□□ 1.13
COL18A1-202ENST00000355480 DDX19BQ9UMR2 479 aa22.09■■□□□ 1.13
COL18A1-202ENST00000355480 GOLGA6L19H0YKK7 550 aa22.09■■□□□ 1.13
COL18A1-202ENST00000355480 DHX16O60231 1041 aaKnown RBP22.09■■□□□ 1.13
COL18A1-202ENST00000355480 TPM2P07951 284 aa22.08■■□□□ 1.13
COL18A1-202ENST00000355480 BECN2A8MW95 431 aa22.08■■□□□ 1.13
COL18A1-202ENST00000355480 DDX49Q9Y6V7 483 aaKnown RBP22.08■■□□□ 1.13
COL18A1-202ENST00000355480 ANO2Q9NQ90 1003 aa22.08■■□□□ 1.12
COL18A1-202ENST00000355480 DHX57Q6P158 1386 aaKnown RBP22.08■■□□□ 1.12
COL18A1-202ENST00000355480 G3BP1Q13283 466 aaKnown RBP eCLIP22.08■■□□□ 1.12
COL18A1-202ENST00000355480 ATF3P18847 181 aa22.07■■□□□ 1.12
COL18A1-202ENST00000355480 TSHZ2Q9NRE2 1034 aa22.07■■□□□ 1.12
COL18A1-202ENST00000355480 REC8O95072 547 aa22.07■■□□□ 1.12
COL18A1-202ENST00000355480 RAPGEF4Q8WZA2 1011 aa22.07■■□□□ 1.12
COL18A1-202ENST00000355480 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
COL18A1-202ENST00000355480 CPLX1O14810 134 aa22.06■■□□□ 1.12
COL18A1-202ENST00000355480 AEBP2Q6ZN18 517 aaPredicted RBP22.06■■□□□ 1.12
COL18A1-202ENST00000355480 WWC1Q8IX03 1113 aa22.06■■□□□ 1.12
COL18A1-202ENST00000355480 PDE4AP27815 886 aa22.05■■□□□ 1.12
COL18A1-202ENST00000355480 TRDNQ13061 729 aa22.05■■□□□ 1.12
COL18A1-202ENST00000355480 DZIP1LQ8IYY4 767 aaKnown RBP22.05■■□□□ 1.12
COL18A1-202ENST00000355480 TSPYL4Q9UJ04 414 aa22.05■■□□□ 1.12
COL18A1-202ENST00000355480 TPM1P09493 284 aa22.04■■□□□ 1.12
COL18A1-202ENST00000355480 SLC4A3P48751 1232 aa22.03■■□□□ 1.12
COL18A1-202ENST00000355480 ROCK1Q13464 1354 aa22.03■■□□□ 1.12
COL18A1-202ENST00000355480 USP35Q9P2H5 1018 aa22.03■■□□□ 1.12
COL18A1-202ENST00000355480 KLHL34Q8N239 644 aa22.02■■□□□ 1.11
COL18A1-202ENST00000355480 ZBED9Q6R2W3 1325 aa22.02■■□□□ 1.11
COL18A1-202ENST00000355480 HMOX1P09601 288 aa22.01■■□□□ 1.11
COL18A1-202ENST00000355480 NLRP2Q9NX02 1062 aa22.01■■□□□ 1.11
COL18A1-202ENST00000355480 RNF20Q5VTR2 975 aa22.01■■□□□ 1.11
COL18A1-202ENST00000355480 RUNDC1Q96C34 613 aa22.01■■□□□ 1.11
COL18A1-202ENST00000355480 NFXL1Q6ZNB6 911 aa22.01■■□□□ 1.11
COL18A1-202ENST00000355480 RBM33Q96EV2 1170 aaKnown RBP22■■□□□ 1.11
COL18A1-202ENST00000355480 NUTM2GQ5VZR2 741 aa21.99■■□□□ 1.11
COL18A1-202ENST00000355480 CCDC47Q96A33 483 aaKnown RBP21.99■■□□□ 1.11
COL18A1-202ENST00000355480 GNAI1P63096 354 aa21.99■■□□□ 1.11
COL18A1-202ENST00000355480 CCAR2Q8N163 923 aaKnown RBP21.99■■□□□ 1.11
COL18A1-202ENST00000355480 ERICH2A1L162 156 aa21.99■■□□□ 1.11
COL18A1-202ENST00000355480 SKOR2Q2VWA4 1001 aaPredicted RBP21.99■■□□□ 1.11
COL18A1-202ENST00000355480 PCMTD1Q96MG8 357 aaPredicted RBP21.99■■□□□ 1.11
COL18A1-202ENST00000355480 RIC3Q7Z5B4 369 aa21.98■■□□□ 1.11
COL18A1-202ENST00000355480 MYOM3Q5VTT5 1437 aa21.98■■□□□ 1.11
COL18A1-202ENST00000355480 AIMP1Q12904 312 aaKnown RBP21.98■■□□□ 1.11
COL18A1-202ENST00000355480 TNNT3P45378 269 aaPredicted RBP21.96■■□□□ 1.11
COL18A1-202ENST00000355480 HSP90AB4PQ58FF6 505 aa21.96■■□□□ 1.11
COL18A1-202ENST00000355480 GGNBP2Q9H3C7 697 aa21.96■■□□□ 1.11
COL18A1-202ENST00000355480 NEUROD6Q96NK8 337 aa21.95■■□□□ 1.1
COL18A1-202ENST00000355480 CWC22Q9HCG8 908 aaKnown RBP21.95■■□□□ 1.1
COL18A1-202ENST00000355480 RUSC2Q8N2Y8 1516 aa21.95■■□□□ 1.1
COL18A1-202ENST00000355480 SAMD1Q6SPF0 538 aaPredicted RBP21.95■■□□□ 1.1
COL18A1-202ENST00000355480 CABP2Q9NPB3 220 aa21.94■■□□□ 1.1
COL18A1-202ENST00000355480 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.94■■□□□ 1.1
COL18A1-202ENST00000355480 GAPVD1Q14C86 1478 aa21.94■■□□□ 1.1
COL18A1-202ENST00000355480 ERC2O15083 957 aa21.94■■□□□ 1.1
COL18A1-202ENST00000355480 MIA2Q96PC5 1412 aa21.94■■□□□ 1.1
COL18A1-202ENST00000355480 BICD2Q8TD16 824 aa21.93■■□□□ 1.1
COL18A1-202ENST00000355480 ANKRD20A12PQ8NF67 263 aa21.93■■□□□ 1.1
COL18A1-202ENST00000355480 NLRP6P59044 892 aa21.93■■□□□ 1.1
COL18A1-202ENST00000355480 CCDC43Q96MW1 224 aaKnown RBP21.93■■□□□ 1.1
COL18A1-202ENST00000355480 ZNF644Q9H582 1327 aaPredicted RBP21.92■■□□□ 1.1
COL18A1-202ENST00000355480 IPO7O95373 1038 aaKnown RBP21.92■■□□□ 1.1
COL18A1-202ENST00000355480 HOOK1Q9UJC3 728 aaKnown RBP21.91■■□□□ 1.1
COL18A1-202ENST00000355480 VPS37CA5D8V6 355 aaPredicted RBP21.91■■□□□ 1.1
COL18A1-202ENST00000355480 INTS3Q68E01 1043 aaKnown RBP21.91■■□□□ 1.1
COL18A1-202ENST00000355480 TMEM132EQ6IEE7 984 aa21.91■■□□□ 1.1
COL18A1-202ENST00000355480 WASHC4Q2M389 1173 aa21.9■■□□□ 1.1
COL18A1-202ENST00000355480 CCDC70Q6NSX1 233 aa21.9■■□□□ 1.1
COL18A1-202ENST00000355480 FYB1O15117 783 aa21.9■■□□□ 1.1
COL18A1-202ENST00000355480 STAC3Q96MF2 364 aa21.9■■□□□ 1.1
COL18A1-202ENST00000355480 CCDC27Q2M243 656 aa21.9■■□□□ 1.1
COL18A1-202ENST00000355480 FOSBP53539 338 aa21.89■■□□□ 1.09
COL18A1-202ENST00000355480 PHF23Q9BUL5 403 aaPredicted RBP21.89■■□□□ 1.09
COL18A1-202ENST00000355480 RALYLQ86SE5 291 aaKnown RBP21.88■■□□□ 1.09
COL18A1-202ENST00000355480 LNPKQ9C0E8 428 aa21.88■■□□□ 1.09
COL18A1-202ENST00000355480 SMC3Q9UQE7 1217 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms