RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 CHIC2Q9UKJ5 165 aa32.08■■■□□ 2.73
SMCO4-201ENST00000298966 SLC52A1Q9NWF4 448 aa32.07■■■□□ 2.72
SMCO4-201ENST00000298966 SLAIN2Q9P270 581 aa32.06■■■□□ 2.72
SMCO4-201ENST00000298966 JCADQ9P266 1359 aa32.05■■■□□ 2.72
SMCO4-201ENST00000298966 FGD6Q6ZV73 1430 aa32.04■■■□□ 2.72
SMCO4-201ENST00000298966 SETD1AO15047 1707 aaKnown RBP32.01■■■□□ 2.72
SMCO4-201ENST00000298966 CHD2O14647 1828 aaKnown RBP31.99■■■□□ 2.71
SMCO4-201ENST00000298966 PLEKHG1Q9ULL1 1385 aa31.97■■■□□ 2.71
SMCO4-201ENST00000298966 PPP1R15AO75807 674 aaPredicted RBP31.97■■■□□ 2.71
SMCO4-201ENST00000298966 HDGFP51858 240 aaKnown RBP31.97■■■□□ 2.71
SMCO4-201ENST00000298966 RPRD2Q5VT52 1461 aaKnown RBP31.96■■■□□ 2.71
SMCO4-201ENST00000298966 MYO5BQ9ULV0 1848 aa31.96■■■□□ 2.71
SMCO4-201ENST00000298966 TRIM26Q12899 539 aaPredicted RBP31.95■■■□□ 2.71
SMCO4-201ENST00000298966 ZFYVE9O95405 1425 aa31.94■■■□□ 2.7
SMCO4-201ENST00000298966 COL16A1Q07092 1604 aaPredicted RBP31.93■■■□□ 2.7
SMCO4-201ENST00000298966 RIMS2Q9UQ26 1411 aa31.92■■■□□ 2.7
SMCO4-201ENST00000298966 GCC2Q8IWJ2 1684 aa31.92■■■□□ 2.7
SMCO4-201ENST00000298966 ADGRL2O95490 1459 aa31.91■■■□□ 2.7
SMCO4-201ENST00000298966 C14orf37Q86TY3 774 aa31.9■■■□□ 2.7
SMCO4-201ENST00000298966 NCOA3Q9Y6Q9 1424 aa31.9■■■□□ 2.7
SMCO4-201ENST00000298966 MEX3CQ5U5Q3 659 aaKnown RBP31.88■■■□□ 2.69
SMCO4-201ENST00000298966 TBX22Q9Y458 520 aa31.88■■■□□ 2.69
SMCO4-201ENST00000298966 SPATA31A6Q5VVP1 1343 aa31.88■■■□□ 2.69
SMCO4-201ENST00000298966 TMEM131LA2VDJ0 1609 aa31.86■■■□□ 2.69
SMCO4-201ENST00000298966 ANKRD50Q9ULJ7 1429 aa31.85■■■□□ 2.69
SMCO4-201ENST00000298966 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.85■■■□□ 2.69
SMCO4-201ENST00000298966 ZNF772Q68DY9 489 aaPredicted RBP31.84■■■□□ 2.69
SMCO4-201ENST00000298966 LRP6O75581 1613 aa31.83■■■□□ 2.69
SMCO4-201ENST00000298966 PPARGC1BQ86YN6 1023 aaKnown RBP31.83■■■□□ 2.69
SMCO4-201ENST00000298966 CHGAP10645 457 aaKnown RBP31.82■■■□□ 2.68
SMCO4-201ENST00000298966 CADPS2Q86UW7 1296 aa31.82■■■□□ 2.68
SMCO4-201ENST00000298966 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.8■■■□□ 2.68
SMCO4-201ENST00000298966 AHDC1Q5TGY3 1603 aaPredicted RBP31.8■■■□□ 2.68
SMCO4-201ENST00000298966 ATF3P18847 181 aa31.8■■■□□ 2.68
SMCO4-201ENST00000298966 C19orf44Q9H6X5 657 aa31.79■■■□□ 2.68
SMCO4-201ENST00000298966 SHPRHQ149N8 1683 aa31.79■■■□□ 2.68
SMCO4-201ENST00000298966 DIP2AQ14689 1571 aa31.78■■■□□ 2.68
SMCO4-201ENST00000298966 FAM50AQ14320 339 aaKnown RBP31.78■■■□□ 2.68
SMCO4-201ENST00000298966 TRIM52Q96A61 297 aa31.77■■■□□ 2.68
SMCO4-201ENST00000298966 PIK3R4Q99570 1358 aa31.77■■■□□ 2.68
SMCO4-201ENST00000298966 ADAMTS13Q76LX8 1427 aa31.76■■■□□ 2.68
SMCO4-201ENST00000298966 UPF1Q92900 1129 aaKnown RBP eCLIP31.76■■■□□ 2.67
SMCO4-201ENST00000298966 NUTM2DQ5VT03 806 aaPredicted RBP31.74■■■□□ 2.67
SMCO4-201ENST00000298966 PCGF6Q9BYE7 350 aa31.74■■■□□ 2.67
SMCO4-201ENST00000298966 UNC13BO14795 1591 aa31.71■■■□□ 2.67
SMCO4-201ENST00000298966 RXRBP28702 533 aa31.69■■■□□ 2.66
SMCO4-201ENST00000298966 TRPM2O94759 1503 aa31.69■■■□□ 2.66
SMCO4-201ENST00000298966 E9PCH4 1651 aa31.68■■■□□ 2.66
SMCO4-201ENST00000298966 BRINP3Q76B58 766 aa31.66■■■□□ 2.66
SMCO4-201ENST00000298966 AMOTL2Q9Y2J4 779 aa31.66■■■□□ 2.66
SMCO4-201ENST00000298966 NUTM2BA6NNL0 878 aaPredicted RBP31.65■■■□□ 2.66
SMCO4-201ENST00000298966 NUTM2EB1AL46 878 aaPredicted RBP31.65■■■□□ 2.66
SMCO4-201ENST00000298966 NUTM2AQ8IVF1 878 aaPredicted RBP31.65■■■□□ 2.66
SMCO4-201ENST00000298966 RRBP1Q9P2E9 1410 aaKnown RBP31.62■■■□□ 2.65
SMCO4-201ENST00000298966 CDK12Q9NYV4 1490 aaPredicted RBP31.61■■■□□ 2.65
SMCO4-201ENST00000298966 DCCP43146 1447 aa31.61■■■□□ 2.65
SMCO4-201ENST00000298966 PTPRUQ92729 1446 aa31.61■■■□□ 2.65
SMCO4-201ENST00000298966 IQGAP3Q86VI3 1631 aa31.59■■■□□ 2.65
SMCO4-201ENST00000298966 ASXL1Q8IXJ9 1541 aa31.58■■■□□ 2.65
SMCO4-201ENST00000298966 AFF2P51816 1311 aa31.57■■■□□ 2.64
SMCO4-201ENST00000298966 SETD5Q9C0A6 1442 aa31.56■■■□□ 2.64
SMCO4-201ENST00000298966 NHSL1Q5SYE7 1610 aa31.53■■■□□ 2.64
SMCO4-201ENST00000298966 XRN1Q8IZH2 1706 aaKnown RBP31.53■■■□□ 2.64
SMCO4-201ENST00000298966 LRRC59Q96AG4 307 aaKnown RBP31.52■■■□□ 2.64
SMCO4-201ENST00000298966 MST1RQ04912 1400 aa31.51■■■□□ 2.64
SMCO4-201ENST00000298966 ROCK1Q13464 1354 aa31.51■■■□□ 2.63
SMCO4-201ENST00000298966 NUP155O75694 1391 aa31.5■■■□□ 2.63
SMCO4-201ENST00000298966 SETBP1Q9Y6X0 1596 aa31.49■■■□□ 2.63
SMCO4-201ENST00000298966 NRXN3Q9Y4C0 1643 aa31.49■■■□□ 2.63
SMCO4-201ENST00000298966 C8orf37Q96NL8 207 aa31.46■■■□□ 2.63
SMCO4-201ENST00000298966 RBM6P78332 1123 aaKnown RBP31.44■■■□□ 2.62
SMCO4-201ENST00000298966 ZNF326Q5BKZ1 582 aaKnown RBP31.44■■■□□ 2.62
SMCO4-201ENST00000298966 QTRT2Q9H974 415 aaKnown RBP31.44■■■□□ 2.62
SMCO4-201ENST00000298966 PNPLA6Q8IY17 1366 aa31.43■■■□□ 2.62
SMCO4-201ENST00000298966 RGS12O14924 1447 aa31.42■■■□□ 2.62
SMCO4-201ENST00000298966 ADGRL3Q9HAR2 1447 aa31.41■■■□□ 2.62
SMCO4-201ENST00000298966 METP08581 1390 aa31.41■■■□□ 2.62
SMCO4-201ENST00000298966 SPHKAPQ2M3C7 1700 aa31.41■■■□□ 2.62
SMCO4-201ENST00000298966 DDX17Q92841 729 aaKnown RBP31.39■■■□□ 2.62
SMCO4-201ENST00000298966 NALCNQ8IZF0 1738 aa31.36■■■□□ 2.61
SMCO4-201ENST00000298966 NGLY1Q96IV0 654 aa31.35■■■□□ 2.61
SMCO4-201ENST00000298966 ADAMTS2O95450 1211 aa31.32■■■□□ 2.6
SMCO4-201ENST00000298966 ITGAEP38570 1179 aa31.32■■■□□ 2.6
SMCO4-201ENST00000298966 C1orf167Q5SNV9 1468 aa31.29■■■□□ 2.6
SMCO4-201ENST00000298966 NEXMIFQ5QGS0 1516 aa31.28■■■□□ 2.6
SMCO4-201ENST00000298966 ATAD2Q6PL18 1390 aa31.27■■■□□ 2.6
SMCO4-201ENST00000298966 LAMC1P11047 1609 aa31.26■■■□□ 2.59
SMCO4-201ENST00000298966 CLTCL1P53675 1640 aa31.24■■■□□ 2.59
SMCO4-201ENST00000298966 USP21Q9UK80 565 aa31.24■■■□□ 2.59
SMCO4-201ENST00000298966 KIF1BO60333 1816 aa31.22■■■□□ 2.59
SMCO4-201ENST00000298966 TRPC5Q9UL62 973 aaPredicted RBP31.22■■■□□ 2.59
SMCO4-201ENST00000298966 SOS2Q07890 1332 aaPredicted RBP31.22■■■□□ 2.59
SMCO4-201ENST00000298966 FOXD1Q16676 465 aa31.2■■■□□ 2.59
SMCO4-201ENST00000298966 PTCH1Q13635 1447 aa31.2■■■□□ 2.59
SMCO4-201ENST00000298966 ORAI2Q96SN7 254 aa31.19■■■□□ 2.58
SMCO4-201ENST00000298966 FNBP4Q8N3X1 1017 aaPredicted RBP31.15■■■□□ 2.58
SMCO4-201ENST00000298966 VGFO15240 615 aaPredicted RBP31.14■■■□□ 2.58
SMCO4-201ENST00000298966 ROBO2Q9HCK4 1378 aa31.14■■■□□ 2.58
SMCO4-201ENST00000298966 ZRANB1Q9UGI0 708 aa31.12■■■□□ 2.57
SMCO4-201ENST00000298966 ATRNO75882 1429 aa31.12■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms