RNA–Protein interactions for RNA: ENST00000284049.7

CHD1-201, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD1, Length 6,457 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-201ENST00000284049 AAMPQ13685 434 aa3.85□□□□□ -1.79
CHD1-201ENST00000284049 SF3A1Q15459 793 aaKnown RBP3.85□□□□□ -1.79
CHD1-201ENST00000284049 PPP1R12CQ9BZL4 782 aa3.85□□□□□ -1.79
CHD1-201ENST00000284049 ABL1P00519 1130 aa3.85□□□□□ -1.79
CHD1-201ENST00000284049 ITGAEP38570 1179 aa3.85□□□□□ -1.79
CHD1-201ENST00000284049 MNX1P50219 401 aaPredicted RBP3.85□□□□□ -1.79
CHD1-201ENST00000284049 CARNS1A5YM72 827 aa3.84□□□□□ -1.79
CHD1-201ENST00000284049 REM2Q8IYK8 340 aaPredicted RBP3.84□□□□□ -1.79
CHD1-201ENST00000284049 BAZ1BQ9UIG0 1483 aaKnown RBP3.84□□□□□ -1.79
CHD1-201ENST00000284049 POM121CA8CG34 1229 aa3.84□□□□□ -1.79
CHD1-201ENST00000284049 ANAPC15P60006 121 aa3.84□□□□□ -1.79
CHD1-201ENST00000284049 GNL2Q13823 731 aaKnown RBP3.84□□□□□ -1.79
CHD1-201ENST00000284049 ZSCAN29Q8IWY8 852 aaPredicted RBP3.84□□□□□ -1.79
CHD1-201ENST00000284049 FARP1Q9Y4F1 1045 aaPredicted RBP3.84□□□□□ -1.79
CHD1-201ENST00000284049 EIF4G2P78344 907 aaKnown RBP eCLIP3.84□□□□□ -1.8
CHD1-201ENST00000284049 SULF1Q8IWU6 871 aa3.84□□□□□ -1.8
CHD1-201ENST00000284049 WDR97A6NE52 1622 aa3.84□□□□□ -1.8
CHD1-201ENST00000284049 TBC1D2Q9BYX2 928 aa3.84□□□□□ -1.8
CHD1-201ENST00000284049 TANGO6Q9C0B7 1094 aa3.84□□□□□ -1.8
CHD1-201ENST00000284049 ARID4AP29374 1257 aaPredicted RBP3.83□□□□□ -1.8
CHD1-201ENST00000284049 TMA7Q9Y2S6 64 aaKnown RBP3.83□□□□□ -1.8
CHD1-201ENST00000284049 CCDC136Q96JN2 1154 aa3.83□□□□□ -1.8
CHD1-201ENST00000284049 PSME1Q06323 249 aa3.83□□□□□ -1.8
CHD1-201ENST00000284049 PRDM2Q13029 1718 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 SOX11P35716 441 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 CACNB1Q02641 598 aaPredicted RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 ZNF710Q8N1W2 664 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 PALM3A6NDB9 673 aaPredicted RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 ZC3H6P61129 1189 aaKnown RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 FNBP4Q8N3X1 1017 aaPredicted RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 RDH13Q8NBN7 331 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 TFIP11Q9UBB9 837 aaKnown RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 DDX11L8A8MPP1 907 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 TSNAXIP1Q2TAA8 658 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 LARP1Q6PKG0 1096 aaKnown RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 TMC1Q8TDI8 760 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 NDUFB9Q9Y6M9 179 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 CCDC125Q86Z20 511 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 REPIN1Q9BWE0 567 aaKnown RBP3.82□□□□□ -1.8
CHD1-201ENST00000284049 SLC4A3P48751 1232 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 FOXK1P85037 733 aa3.82□□□□□ -1.8
CHD1-201ENST00000284049 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.82□□□□□ -1.8
CHD1-201ENST00000284049 UBXN4Q92575 508 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 USP17L8P0C7I0 530 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 PRKAR2AP13861 404 aaKnown RBP3.81□□□□□ -1.8
CHD1-201ENST00000284049 GORABQ5T7V8 394 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 DHX37Q8IY37 1157 aaKnown RBP3.81□□□□□ -1.8
CHD1-201ENST00000284049 MTMR14Q8NCE2 650 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 TOP2AP11388 1531 aaKnown RBP3.81□□□□□ -1.8
CHD1-201ENST00000284049 FDX1P10109 184 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 C2orf72A6NCS6 295 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 VAC14Q08AM6 782 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 GLYCTKQ8IVS8 523 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 SIRT1Q96EB6 747 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 ATAD2BQ9ULI0 1458 aa3.81□□□□□ -1.8
CHD1-201ENST00000284049 CCDC61Q9Y6R9 512 aa3.8□□□□□ -1.8
CHD1-201ENST00000284049 FAM217BQ9NTX9 383 aaPredicted RBP3.8□□□□□ -1.8
CHD1-201ENST00000284049 GTF2F1P35269 517 aaKnown RBP eCLIP3.8□□□□□ -1.8
CHD1-201ENST00000284049 NAALADL2Q58DX5 795 aa3.8□□□□□ -1.8
CHD1-201ENST00000284049 ERCC5P28715 1186 aaPredicted RBP3.8□□□□□ -1.8
CHD1-201ENST00000284049 HDGFP51858 240 aaKnown RBP3.8□□□□□ -1.8
CHD1-201ENST00000284049 KIF12Q96FN5 646 aa3.8□□□□□ -1.8
CHD1-201ENST00000284049 PTGDRQ13258 359 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 GPR37O15354 613 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 RIC3Q7Z5B4 369 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 KCNH8Q96L42 1107 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 MYH16Q9H6N6 1097 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 MRS2Q9HD23 443 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 ZRANB1Q9UGI0 708 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 HMGB1P1B2RPK0 211 aaPredicted RBP3.79□□□□□ -1.8
CHD1-201ENST00000284049 TTC16Q8NEE8 873 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 EPAS1Q99814 870 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 VTI1AQ96AJ9 217 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 ZBTB3Q9H5J0 574 aa3.79□□□□□ -1.8
CHD1-201ENST00000284049 ZNF16P17020 682 aaPredicted RBP3.78□□□□□ -1.8
CHD1-201ENST00000284049 RASA1P20936 1047 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 XPCQ01831 940 aaPredicted RBP3.78□□□□□ -1.8
CHD1-201ENST00000284049 ANKRD33BA6NCL7 494 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 SKIP12755 728 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 OSBPP22059 807 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 SLAIN1Q8ND83 568 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 METTL3Q86U44 580 aaKnown RBP3.78□□□□□ -1.8
CHD1-201ENST00000284049 RSF1Q96T23 1441 aaPredicted RBP3.78□□□□□ -1.8
CHD1-201ENST00000284049 C6orf229H3BNL8 230 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 DNAJA1P31689 397 aaKnown RBP3.78□□□□□ -1.8
CHD1-201ENST00000284049 EVI5O60447 810 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 ATG7O95352 703 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 FAM161AQ3B820 660 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 LIMD1Q9UGP4 676 aa3.78□□□□□ -1.8
CHD1-201ENST00000284049 ATP2B1P20020 1258 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 ZNF594Q96JF6 807 aaPredicted RBP3.77□□□□□ -1.81
CHD1-201ENST00000284049 MS4A4AQ96JQ5 239 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 CCSER2Q9H7U1 834 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 MOXD2PA6NHM9 499 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 VPS37DQ86XT2 251 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 SPATA32Q96LK8 384 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 DNAJC2Q99543 621 aaKnown RBP3.77□□□□□ -1.81
CHD1-201ENST00000284049 PITPNM1O00562 1244 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 MICALL2Q8IY33 904 aa3.77□□□□□ -1.81
CHD1-201ENST00000284049 ZNF592Q92610 1267 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms