RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 XIRP1Q702N8 1843 aaKnown RBP19.12■□□□□ 0.65
SLIRP-201ENST00000238688 LRRC7Q96NW7 1537 aa19.11■□□□□ 0.65
SLIRP-201ENST00000238688 SLC52A1Q9NWF4 448 aa19.09■□□□□ 0.65
SLIRP-201ENST00000238688 TMEM131LA2VDJ0 1609 aa19.08■□□□□ 0.65
SLIRP-201ENST00000238688 STAG3Q9UJ98 1225 aa19.07■□□□□ 0.64
SLIRP-201ENST00000238688 EID1Q9Y6B2 187 aa19.07■□□□□ 0.64
SLIRP-201ENST00000238688 TRIM52Q96A61 297 aa19.06■□□□□ 0.64
SLIRP-201ENST00000238688 MPHOSPH9Q99550 1183 aa19.06■□□□□ 0.64
SLIRP-201ENST00000238688 ZFYVE9O95405 1425 aa19.05■□□□□ 0.64
SLIRP-201ENST00000238688 NUP155O75694 1391 aa19.04■□□□□ 0.64
SLIRP-201ENST00000238688 TOM1O60784 492 aa19.03■□□□□ 0.64
SLIRP-201ENST00000238688 PIP4K2BP78356 416 aa19■□□□□ 0.63
SLIRP-201ENST00000238688 SLC26A8Q96RN1 970 aa19■□□□□ 0.63
SLIRP-201ENST00000238688 ANKRD30BQ9BXX2 1392 aa19■□□□□ 0.63
SLIRP-201ENST00000238688 TONSLQ96HA7 1378 aa18.99■□□□□ 0.63
SLIRP-201ENST00000238688 HSPA1LP34931 641 aa18.99■□□□□ 0.63
SLIRP-201ENST00000238688 SLC4A1APQ9BWU0 796 aaKnown RBP18.99■□□□□ 0.63
SLIRP-201ENST00000238688 RIMS2Q9UQ26 1411 aa18.99■□□□□ 0.63
SLIRP-201ENST00000238688 CHD2O14647 1828 aaKnown RBP18.98■□□□□ 0.63
SLIRP-201ENST00000238688 DISP3Q9P2K9 1392 aa18.98■□□□□ 0.63
SLIRP-201ENST00000238688 SPHKAPQ2M3C7 1700 aa18.98■□□□□ 0.63
SLIRP-201ENST00000238688 NWD1Q149M9 1564 aa18.98■□□□□ 0.63
SLIRP-201ENST00000238688 PLEKHG1Q9ULL1 1385 aa18.96■□□□□ 0.63
SLIRP-201ENST00000238688 KCNA6P17658 529 aa18.96■□□□□ 0.63
SLIRP-201ENST00000238688 SCAF1Q9H7N4 1312 aaKnown RBP18.96■□□□□ 0.63
SLIRP-201ENST00000238688 ILDR2Q71H61 639 aa18.95■□□□□ 0.62
SLIRP-201ENST00000238688 TMEM94Q12767 1356 aa18.93■□□□□ 0.62
SLIRP-201ENST00000238688 ADAMTS13Q76LX8 1427 aa18.92■□□□□ 0.62
SLIRP-201ENST00000238688 ZNF316A6NFI3 1004 aaPredicted RBP18.92■□□□□ 0.62
SLIRP-201ENST00000238688 SENP3Q9H4L4 574 aaPredicted RBP18.92■□□□□ 0.62
SLIRP-201ENST00000238688 CHGAP10645 457 aaKnown RBP18.91■□□□□ 0.62
SLIRP-201ENST00000238688 NKTRP30414 1462 aaKnown RBP18.9■□□□□ 0.62
SLIRP-201ENST00000238688 NUTM2DQ5VT03 806 aaPredicted RBP18.9■□□□□ 0.62
SLIRP-201ENST00000238688 RBM33Q96EV2 1170 aaKnown RBP18.9■□□□□ 0.62
SLIRP-201ENST00000238688 CLTCL1P53675 1640 aa18.89■□□□□ 0.62
SLIRP-201ENST00000238688 PPP1R15AO75807 674 aaPredicted RBP18.89■□□□□ 0.61
SLIRP-201ENST00000238688 SIN3AQ96ST3 1273 aa18.89■□□□□ 0.61
SLIRP-201ENST00000238688 HDGFP51858 240 aaKnown RBP18.88■□□□□ 0.61
SLIRP-201ENST00000238688 TBX22Q9Y458 520 aa18.88■□□□□ 0.61
SLIRP-201ENST00000238688 NRXN3Q9Y4C0 1643 aa18.88■□□□□ 0.61
SLIRP-201ENST00000238688 NEUROD1Q13562 356 aa18.87■□□□□ 0.61
SLIRP-201ENST00000238688 PROSER2Q86WR7 435 aaPredicted RBP18.87■□□□□ 0.61
SLIRP-201ENST00000238688 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.87■□□□□ 0.61
SLIRP-201ENST00000238688 TRPM2O94759 1503 aa18.86■□□□□ 0.61
SLIRP-201ENST00000238688 BCANQ96GW7 911 aa18.86■□□□□ 0.61
SLIRP-201ENST00000238688 MED1Q15648 1581 aaPredicted RBP18.85■□□□□ 0.61
SLIRP-201ENST00000238688 DIP2AQ14689 1571 aa18.85■□□□□ 0.61
SLIRP-201ENST00000238688 KIF1BO60333 1816 aa18.84■□□□□ 0.61
SLIRP-201ENST00000238688 FAM135BQ49AJ0 1406 aa18.83■□□□□ 0.61
SLIRP-201ENST00000238688 PTPRUQ92729 1446 aa18.83■□□□□ 0.6
SLIRP-201ENST00000238688 SETBP1Q9Y6X0 1596 aa18.81■□□□□ 0.6
SLIRP-201ENST00000238688 NEXMIFQ5QGS0 1516 aa18.81■□□□□ 0.6
SLIRP-201ENST00000238688 ROBO1Q9Y6N7 1651 aa18.81■□□□□ 0.6
SLIRP-201ENST00000238688 PIK3R4Q99570 1358 aa18.81■□□□□ 0.6
SLIRP-201ENST00000238688 XRN1Q8IZH2 1706 aaKnown RBP18.78■□□□□ 0.6
SLIRP-201ENST00000238688 CCDC144AA2RUR9 1427 aa18.77■□□□□ 0.6
SLIRP-201ENST00000238688 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.77■□□□□ 0.59
SLIRP-201ENST00000238688 NCOA3Q9Y6Q9 1424 aa18.76■□□□□ 0.59
SLIRP-201ENST00000238688 MSH6P52701 1360 aa18.76■□□□□ 0.59
SLIRP-201ENST00000238688 ZNF326Q5BKZ1 582 aaKnown RBP18.75■□□□□ 0.59
SLIRP-201ENST00000238688 SETD1AO15047 1707 aaKnown RBP18.74■□□□□ 0.59
SLIRP-201ENST00000238688 METP08581 1390 aa18.74■□□□□ 0.59
SLIRP-201ENST00000238688 STAC3Q96MF2 364 aa18.74■□□□□ 0.59
SLIRP-201ENST00000238688 AMOTL2Q9Y2J4 779 aa18.74■□□□□ 0.59
SLIRP-201ENST00000238688 SOCS7O14512 581 aa18.73■□□□□ 0.59
SLIRP-201ENST00000238688 SLAIN2Q9P270 581 aa18.73■□□□□ 0.59
SLIRP-201ENST00000238688 PPLO60437 1756 aa18.73■□□□□ 0.59
SLIRP-201ENST00000238688 FOXD1Q16676 465 aa18.72■□□□□ 0.59
SLIRP-201ENST00000238688 L3MBTL2Q969R5 705 aa18.71■□□□□ 0.59
SLIRP-201ENST00000238688 PHLPP1O60346 1717 aa18.69■□□□□ 0.58
SLIRP-201ENST00000238688 DIEXFQ68CQ4 756 aaKnown RBP18.68■□□□□ 0.58
SLIRP-201ENST00000238688 C19orf44Q9H6X5 657 aa18.68■□□□□ 0.58
SLIRP-201ENST00000238688 COL16A1Q07092 1604 aaPredicted RBP18.67■□□□□ 0.58
SLIRP-201ENST00000238688 RGS17Q9UGC6 210 aaPredicted RBP18.66■□□□□ 0.58
SLIRP-201ENST00000238688 RPGRIP1LQ68CZ1 1315 aa18.65■□□□□ 0.58
SLIRP-201ENST00000238688 IFT172Q9UG01 1749 aa18.65■□□□□ 0.58
SLIRP-201ENST00000238688 NALCNQ8IZF0 1738 aa18.64■□□□□ 0.57
SLIRP-201ENST00000238688 C14orf37Q86TY3 774 aa18.64■□□□□ 0.57
SLIRP-201ENST00000238688 CADPS2Q86UW7 1296 aa18.64■□□□□ 0.57
SLIRP-201ENST00000238688 SPATA31E1Q6ZUB1 1445 aa18.64■□□□□ 0.57
SLIRP-201ENST00000238688 RALGAPBQ86X10 1494 aa18.64■□□□□ 0.57
SLIRP-201ENST00000238688 LAMC1P11047 1609 aa18.63■□□□□ 0.57
SLIRP-201ENST00000238688 VGFO15240 615 aaPredicted RBP18.62■□□□□ 0.57
SLIRP-201ENST00000238688 DCCP43146 1447 aa18.62■□□□□ 0.57
SLIRP-201ENST00000238688 AHDC1Q5TGY3 1603 aaPredicted RBP18.62■□□□□ 0.57
SLIRP-201ENST00000238688 MST1RQ04912 1400 aa18.6■□□□□ 0.57
SLIRP-201ENST00000238688 PRAG1Q86YV5 1406 aa18.6■□□□□ 0.57
SLIRP-201ENST00000238688 ATF3P18847 181 aa18.6■□□□□ 0.57
SLIRP-201ENST00000238688 ADGRL3Q9HAR2 1447 aa18.59■□□□□ 0.57
SLIRP-201ENST00000238688 PHF23Q9BUL5 403 aaPredicted RBP18.59■□□□□ 0.57
SLIRP-201ENST00000238688 ROBO2Q9HCK4 1378 aa18.58■□□□□ 0.57
SLIRP-201ENST00000238688 ADGRF5Q8IZF2 1346 aa18.58■□□□□ 0.57
SLIRP-201ENST00000238688 EIF4G2P78344 907 aaKnown RBP eCLIP18.58■□□□□ 0.56
SLIRP-201ENST00000238688 BRINP3Q76B58 766 aa18.58■□□□□ 0.56
SLIRP-201ENST00000238688 PTCH1Q13635 1447 aa18.57■□□□□ 0.56
SLIRP-201ENST00000238688 NHSL1Q5SYE7 1610 aa18.56■□□□□ 0.56
SLIRP-201ENST00000238688 JCADQ9P266 1359 aa18.56■□□□□ 0.56
SLIRP-201ENST00000238688 ASXL1Q8IXJ9 1541 aa18.56■□□□□ 0.56
SLIRP-201ENST00000238688 KIAA1210Q9ULL0 1709 aa18.56■□□□□ 0.56
SLIRP-201ENST00000238688 TRPM1Q7Z4N2 1603 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms