RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Dhx16G3X8X0 1044 aaKnown RBP14.47□□□□□ -0.09
Trim56-201ENSMUST00000054384 March6Q6ZQ89 909 aa14.47□□□□□ -0.09
Trim56-201ENSMUST00000054384 Ccdc173A0JLY1 547 aa14.47□□□□□ -0.09
Trim56-201ENSMUST00000054384 EzrP26040 586 aaKnown RBP14.47□□□□□ -0.09
Trim56-201ENSMUST00000054384 Kdm5dQ62240 1548 aa14.46□□□□□ -0.09
Trim56-201ENSMUST00000054384 Nolc1E9Q5C9 702 aaKnown RBP14.46□□□□□ -0.1
Trim56-201ENSMUST00000054384 Cabp1Q9JLK7 227 aa14.46□□□□□ -0.1
Trim56-201ENSMUST00000054384 Kif16bB1AVY7 1312 aa14.46□□□□□ -0.1
Trim56-201ENSMUST00000054384 Sycp1Q62209 993 aa14.45□□□□□ -0.1
Trim56-201ENSMUST00000054384 Kif3cO35066 796 aa14.45□□□□□ -0.1
Trim56-201ENSMUST00000054384 Nap1l1P28656 391 aaKnown RBP14.45□□□□□ -0.1
Trim56-201ENSMUST00000054384 NaspQ99MD9 773 aaKnown RBP14.45□□□□□ -0.1
Trim56-201ENSMUST00000054384 Necab1Q8BG18 352 aa14.45□□□□□ -0.1
Trim56-201ENSMUST00000054384 Hdgfl1Q2VPR5 283 aa14.44□□□□□ -0.1
Trim56-201ENSMUST00000054384 Arid3cA6PWV5 409 aa14.44□□□□□ -0.1
Trim56-201ENSMUST00000054384 Smc3Q9CW03 1217 aaKnown RBP14.44□□□□□ -0.1
Trim56-201ENSMUST00000054384 CalrP14211 416 aaKnown RBP14.44□□□□□ -0.1
Trim56-201ENSMUST00000054384 IbspQ61711 324 aa14.44□□□□□ -0.1
Trim56-201ENSMUST00000054384 Rabep1O35551 862 aa14.44□□□□□ -0.1
Trim56-201ENSMUST00000054384 Phactr2B1AVP0 632 aa14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Ppm1fQ8CGA0 452 aa14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Hnrnpul1Q8VDM6 859 aaKnown RBP14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Ciz1Q8VEH2 845 aa14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Rsph4aQ8BYM7 716 aa14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 G3bp1P97855 465 aaKnown RBP14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Fan1Q69ZT1 1020 aa14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Usp47Q8BY87 1376 aa14.43□□□□□ -0.1
Trim56-201ENSMUST00000054384 Wdr78E9PYY5 807 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Mns1Q61884 491 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Cc2d1aQ8K1A6 943 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Pank3Q8R2W9 370 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Cabp4Q8VHC5 271 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Ppp4r3bQ922R5 820 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Gprasp1Q5U4C1 1347 aa14.42□□□□□ -0.1
Trim56-201ENSMUST00000054384 Ubxn4Q8VCH8 506 aa14.41□□□□□ -0.1
Trim56-201ENSMUST00000054384 AampJ3QN89 436 aa14.41□□□□□ -0.1
Trim56-201ENSMUST00000054384 MlecQ6ZQI3 291 aaKnown RBP14.41□□□□□ -0.1
Trim56-201ENSMUST00000054384 Kif3bQ61771 747 aa14.41□□□□□ -0.1
Trim56-201ENSMUST00000054384 UacaQ8CGB3 1411 aa14.4□□□□□ -0.1
Trim56-201ENSMUST00000054384 FosbP13346 338 aa14.4□□□□□ -0.1
Trim56-201ENSMUST00000054384 CrcpO35427 148 aa14.4□□□□□ -0.1
Trim56-201ENSMUST00000054384 Ubap1lG3UW59 384 aa14.4□□□□□ -0.1
Trim56-201ENSMUST00000054384 Ak7Q9D2H2 614 aa14.4□□□□□ -0.1
Trim56-201ENSMUST00000054384 Erc2Q6PH08 957 aa14.4□□□□□ -0.1
Trim56-201ENSMUST00000054384 Trim29Q8R2Q0 587 aa14.39□□□□□ -0.11
Trim56-201ENSMUST00000054384 GsdmaQ9EST1 446 aa14.39□□□□□ -0.11
Trim56-201ENSMUST00000054384 Mad1l1Q9WTX8 717 aaKnown RBP14.39□□□□□ -0.11
Trim56-201ENSMUST00000054384 UvssaQ9D479 717 aa14.38□□□□□ -0.11
Trim56-201ENSMUST00000054384 Chmp7Q8R1T1 451 aa14.38□□□□□ -0.11
Trim56-201ENSMUST00000054384 Rsph6aQ8CDR2 708 aa14.38□□□□□ -0.11
Trim56-201ENSMUST00000054384 Cchcr1Q8K2I2 770 aa14.38□□□□□ -0.11
Trim56-201ENSMUST00000054384 Neurod6P48986 337 aa14.38□□□□□ -0.11
Trim56-201ENSMUST00000054384 Utp14aQ640M1 767 aaKnown RBP14.37□□□□□ -0.11
Trim56-201ENSMUST00000054384 Triml2E9PW10 424 aa14.37□□□□□ -0.11
Trim56-201ENSMUST00000054384 Znf771Q8BJ90 317 aa14.37□□□□□ -0.11
Trim56-201ENSMUST00000054384 Cux1P53564 1515 aa14.37□□□□□ -0.11
Trim56-201ENSMUST00000054384 Cep112Q5PR68 954 aa14.37□□□□□ -0.11
Trim56-201ENSMUST00000054384 Pdcl3Q8BVF2 240 aa14.36□□□□□ -0.11
Trim56-201ENSMUST00000054384 Trim58Q5NCC9 485 aa14.36□□□□□ -0.11
Trim56-201ENSMUST00000054384 Cdkn1cP49919 348 aa14.35□□□□□ -0.11
Trim56-201ENSMUST00000054384 Polr1aO35134 1717 aaKnown RBP14.35□□□□□ -0.11
Trim56-201ENSMUST00000054384 Hmox1P14901 289 aa14.35□□□□□ -0.11
Trim56-201ENSMUST00000054384 Ccdc88bQ4QRL3 1481 aa14.35□□□□□ -0.11
Trim56-201ENSMUST00000054384 Cfap99A0A140LIX9 648 aa14.34□□□□□ -0.11
Trim56-201ENSMUST00000054384 Fam13bQ8K2H3 851 aa14.34□□□□□ -0.11
Trim56-201ENSMUST00000054384 Chmp4cQ9D7F7 232 aa14.34□□□□□ -0.11
Trim56-201ENSMUST00000054384 Me1P06801 572 aa14.34□□□□□ -0.11
Trim56-201ENSMUST00000054384 Psma5Q9Z2U1 241 aaKnown RBP14.34□□□□□ -0.11
Trim56-201ENSMUST00000054384 Lrrcc1Q69ZB0 1026 aa14.33□□□□□ -0.12
Trim56-201ENSMUST00000054384 Gtf2f1Q3THK3 508 aaKnown RBP14.33□□□□□ -0.12
Trim56-201ENSMUST00000054384 NexnQ7TPW1 607 aa14.33□□□□□ -0.12
Trim56-201ENSMUST00000054384 Commd10Q8JZY2 202 aa14.33□□□□□ -0.12
Trim56-201ENSMUST00000054384 Q9D2X8 372 aa14.32□□□□□ -0.12
Trim56-201ENSMUST00000054384 Usp48Q3V0C5 1052 aa14.32□□□□□ -0.12
Trim56-201ENSMUST00000054384 PogkQ80TC5 607 aa14.32□□□□□ -0.12
Trim56-201ENSMUST00000054384 Inpp5dQ9ES52 1191 aa14.32□□□□□ -0.12
Trim56-201ENSMUST00000054384 Def6Q8C2K1 630 aa14.32□□□□□ -0.12
Trim56-201ENSMUST00000054384 Smc2Q8CG48 1191 aaKnown RBP14.31□□□□□ -0.12
Trim56-201ENSMUST00000054384 Q8C5K5 320 aa14.31□□□□□ -0.12
Trim56-201ENSMUST00000054384 Erlin2Q8BFZ9 340 aa14.31□□□□□ -0.12
Trim56-201ENSMUST00000054384 PdcQ9QW08 244 aa14.31□□□□□ -0.12
Trim56-201ENSMUST00000054384 Fnbp4Q6ZQ03 1031 aa14.3□□□□□ -0.12
Trim56-201ENSMUST00000054384 Atl3Q91YH5 541 aa14.3□□□□□ -0.12
Trim56-201ENSMUST00000054384 Kiaa0753Q6A000 959 aa14.3□□□□□ -0.12
Trim56-201ENSMUST00000054384 Ric3Q8BPM6 367 aa14.3□□□□□ -0.12
Trim56-201ENSMUST00000054384 Gps2Q921N8 327 aa14.3□□□□□ -0.12
Trim56-201ENSMUST00000054384 Pds5bQ4VA53 1446 aaKnown RBP14.29□□□□□ -0.12
Trim56-201ENSMUST00000054384 Cetn4Q8K4K1 168 aa14.29□□□□□ -0.12
Trim56-201ENSMUST00000054384 SelenooQ9DBC0 667 aa14.29□□□□□ -0.12
Trim56-201ENSMUST00000054384 Cep89Q9CZX2 791 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Gsdma3Q5Y4Y6 464 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Dapk1Q80YE7 1442 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Ints3Q7TPD0 1041 aaKnown RBP14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Znf704Q9ERQ3 566 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Ccnb3Q810T2 1396 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Usp16Q99LG0 825 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Cc2d2aQ8CFW7 1633 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Gm21190A0A0G2JGJ6 266 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Fam184bQ0KK56 942 aa14.28□□□□□ -0.12
Trim56-201ENSMUST00000054384 Cttnbp2B9EJA2 1648 aa14.27□□□□□ -0.12
Retrieved 100 of 22,080 RNA–protein pairs in 98.4 ms