RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W SWP1Q02795 286 aa1.48□□□□□ -2.17
VAM3YOR106W YDL180WQ12301 547 aa1.48□□□□□ -2.17
VAM3YOR106W CYR1P08678 2026 aaKnown RBP1.47□□□□□ -2.17
VAM3YOR106W MSB2P32334 1306 aa1.47□□□□□ -2.17
VAM3YOR106W RPO26P20435 155 aa1.47□□□□□ -2.17
VAM3YOR106W MRPL17P36528 281 aa1.47□□□□□ -2.17
VAM3YOR106W RIO2P40160 425 aaKnown RBP1.47□□□□□ -2.17
VAM3YOR106W PRM8P53174 237 aa1.47□□□□□ -2.17
VAM3YOR106W EAF6P47128 113 aa1.46□□□□□ -2.18
VAM3YOR106W GAS3Q03655 524 aa1.46□□□□□ -2.18
VAM3YOR106W SKG1P36169 355 aa1.45□□□□□ -2.18
VAM3YOR106W YBR209WP38311 105 aa1.45□□□□□ -2.18
VAM3YOR106W CUS2P53830 285 aaPredicted RBP1.45□□□□□ -2.18
VAM3YOR106W POP3P53833 195 aaPredicted RBP1.45□□□□□ -2.18
VAM3YOR106W YNL146C-AQ3E7Z1 64 aa1.45□□□□□ -2.18
VAM3YOR106W URA6P15700 204 aa1.44□□□□□ -2.18
VAM3YOR106W YCR016WP25617 290 aaKnown RBP1.44□□□□□ -2.18
VAM3YOR106W RPL37AP49166 88 aaKnown RBP1.44□□□□□ -2.18
VAM3YOR106W LAP3Q01532 483 aaKnown RBP RIP-Chip data1.44□□□□□ -2.18not detected
VAM3YOR106W PET117Q02771 107 aa1.44□□□□□ -2.18
VAM3YOR106W FSF1Q12029 327 aaKnown RBP1.44□□□□□ -2.18
VAM3YOR106W TDA8Q6B2U8 126 aa1.44□□□□□ -2.18
VAM3YOR106W TIM9O74700 87 aa1.43□□□□□ -2.18
VAM3YOR106W COX15P40086 486 aa1.43□□□□□ -2.18
VAM3YOR106W PRE6P40303 254 aaKnown RBP1.43□□□□□ -2.18
VAM3YOR106W LIA1P47120 325 aaKnown RBP1.43□□□□□ -2.18
VAM3YOR106W FYV6P53913 173 aa1.43□□□□□ -2.18
VAM3YOR106W SRY1P36007 326 aa1.42□□□□□ -2.18
VAM3YOR106W GVP36P40531 326 aaKnown RBP1.42□□□□□ -2.18
VAM3YOR106W KNH1P50112 268 aa1.42□□□□□ -2.18
VAM3YOR106W YLR283WQ05867 314 aa1.42□□□□□ -2.18
VAM3YOR106W GPM2Q12008 311 aa1.42□□□□□ -2.18
VAM3YOR106W ATG40Q99325 256 aa1.42□□□□□ -2.18
VAM3YOR106W INO80P53115 1489 aa1.42□□□□□ -2.18
VAM3YOR106W SSO1P32867 290 aa1.41□□□□□ -2.18
VAM3YOR106W MSN4P33749 630 aa1.41□□□□□ -2.18
VAM3YOR106W RPC17P47076 161 aa1.41□□□□□ -2.18
VAM3YOR106W CDC123Q05791 360 aa1.41□□□□□ -2.18
VAM3YOR106W CDC28P00546 298 aaKnown RBP1.4□□□□□ -2.19
VAM3YOR106W CFT1Q06632 1357 aaKnown RBP1.39□□□□□ -2.19
VAM3YOR106W MATALPHA1P0CY06 175 aa1.39□□□□□ -2.19
VAM3YOR106W HMLALPHA1P0CY07 175 aa1.39□□□□□ -2.19
VAM3YOR106W MCP1Q12106 302 aa1.39□□□□□ -2.19
VAM3YOR106W DBF2P22204 572 aa1.38□□□□□ -2.19
VAM3YOR106W FAR7P43592 221 aa1.38□□□□□ -2.19
VAM3YOR106W BXI1P48558 297 aa1.38□□□□□ -2.19
VAM3YOR106W BRR6P53062 197 aa1.38□□□□□ -2.19
VAM3YOR106W YMR007WQ03675 126 aa1.38□□□□□ -2.19
VAM3YOR106W APS1P35181 156 aa1.37□□□□□ -2.19
VAM3YOR106W KDX1P36005 433 aa1.37□□□□□ -2.19
VAM3YOR106W SHE2P36068 246 aaKnown RBP RIP-Chip data1.37□□□□□ -2.19not detected
VAM3YOR106W YBR285WP38354 144 aa1.37□□□□□ -2.19
VAM3YOR106W YEL067CP39978 195 aa1.37□□□□□ -2.19
VAM3YOR106W RRN5Q02983 363 aa1.37□□□□□ -2.19
VAM3YOR106W YLR236CA0A023PZG4 107 aa1.36□□□□□ -2.19
VAM3YOR106W SEC17P32602 292 aa1.36□□□□□ -2.19
VAM3YOR106W MIC26P50087 233 aa1.36□□□□□ -2.19
VAM3YOR106W UTP30P36144 274 aaKnown RBP1.35□□□□□ -2.19
VAM3YOR106W OPY1P38271 328 aa1.35□□□□□ -2.19
VAM3YOR106W CUE4Q04201 117 aaPredicted RBP1.35□□□□□ -2.19
VAM3YOR106W SIR2P06700 562 aa1.34□□□□□ -2.19
VAM3YOR106W PBN1P25580 416 aa1.34□□□□□ -2.19
VAM3YOR106W TCA17P32613 152 aa1.34□□□□□ -2.19
VAM3YOR106W SIP3P38717 1229 aa1.34□□□□□ -2.19
VAM3YOR106W AST2P39945 430 aaKnown RBP1.34□□□□□ -2.19
VAM3YOR106W RMD6P39975 231 aa1.34□□□□□ -2.19
VAM3YOR106W ARO8P53090 500 aaKnown RBP1.34□□□□□ -2.19
VAM3YOR106W ALG13P53178 202 aa1.34□□□□□ -2.19
VAM3YOR106W RCE1Q03530 315 aa1.34□□□□□ -2.19
VAM3YOR106W AQY2P0CD90 149 aa1.33□□□□□ -2.2
VAM3YOR106W URA5P13298 226 aaKnown RBP1.33□□□□□ -2.2
VAM3YOR106W NSP1P14907 823 aaKnown RBP1.33□□□□□ -2.2
VAM3YOR106W SOK1P40317 901 aa1.33□□□□□ -2.2
VAM3YOR106W YHR007C-AQ07074 71 aa1.33□□□□□ -2.2
VAM3YOR106W SEC11P15367 167 aa1.32□□□□□ -2.2
VAM3YOR106W BET1P22804 142 aa1.32□□□□□ -2.2
VAM3YOR106W VMA6P32366 345 aaKnown RBP1.32□□□□□ -2.2
VAM3YOR106W RAD28Q12021 506 aa1.32□□□□□ -2.2
VAM3YOR106W RPL28P02406 149 aaKnown RBP1.31□□□□□ -2.2
VAM3YOR106W RHO1P06780 209 aaKnown RBP1.31□□□□□ -2.2
VAM3YOR106W KSS1P14681 368 aa1.31□□□□□ -2.2
VAM3YOR106W EDC3P39998 551 aaKnown RBP1.31□□□□□ -2.2
VAM3YOR106W HUA1P40325 198 aa1.31□□□□□ -2.2
VAM3YOR106W YAE1P47118 141 aaPredicted RBP1.31□□□□□ -2.2
VAM3YOR106W RPL37BP51402 88 aaKnown RBP1.31□□□□□ -2.2
VAM3YOR106W YDR274CP87283 123 aa1.31□□□□□ -2.2
VAM3YOR106W YER188C-AP0C0V2 99 aa1.3□□□□□ -2.2
VAM3YOR106W YMR31P19955 123 aa1.3□□□□□ -2.2
VAM3YOR106W RPL24BP24000 155 aaKnown RBP1.3□□□□□ -2.2
VAM3YOR106W PTM1P32857 523 aa1.3□□□□□ -2.2
VAM3YOR106W MIC12P38341 106 aa1.3□□□□□ -2.2
VAM3YOR106W FLX1P40464 311 aa1.3□□□□□ -2.2
VAM3YOR106W YDR249CQ03787 373 aa1.3□□□□□ -2.2
VAM3YOR106W THP2O13539 261 aaKnown RBP1.29□□□□□ -2.2
VAM3YOR106W IDH1P28834 360 aaKnown RBP RIP-Chip data1.29□□□□□ -2.2not detected
VAM3YOR106W YER085CP40058 173 aa1.28□□□□□ -2.2
VAM3YOR106W CWC27Q02770 301 aa1.27□□□□□ -2.21
VAM3YOR106W YHR212W-AP0CX91 67 aa1.26□□□□□ -2.21
VAM3YOR106W PPA2P28239 310 aa1.26□□□□□ -2.21
VAM3YOR106W VMA22P38784 181 aa1.26□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 253.4 ms