RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL40B	YKR094C	DID2	P69771	204 aa		0.99	□□□□□ -2.25
RPL40B	YKR094C	RSM10	Q03201	203 aa		0.99	□□□□□ -2.25
RPL40B	YKR094C	GAS3	Q03655	524 aa		0.99	□□□□□ -2.25
RPL40B	YKR094C	FUS2	Q05670	677 aa		0.99	□□□□□ -2.25
RPL40B	YKR094C	YET3	Q07451	203 aa		0.99	□□□□□ -2.25
RPL40B	YKR094C	ATO3	Q12359	275 aa		0.99	□□□□□ -2.25
RPL40B	YKR094C	JIP3	O13555	125 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	QCR7	P00128	127 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	URA5	P13298	226 aa	Known RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	KSS1	P14681	368 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	SNF6	P18888	332 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	CKS1	P20486	150 aa	Known RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	MAG1	P22134	296 aa	Known RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	BET1	P22804	142 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	ATP7	P30902	174 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	ECM33	P38248	429 aa	Known RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	SHG1	P38337	142 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	AIM2	P39721	246 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	HMF1	P40037	129 aa	Known RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	MRPL49	P40858	161 aa	Predicted RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	RPA43	P46669	326 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	MNN5	P46982	586 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	CIS3	P47001	227 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	YGR219W	P53307	113 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	RTC4	P53850	401 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	LSM7	P53905	115 aa	Known RBP	0.98	□□□□□ -2.25
RPL40B	YKR094C	YLR036C	Q07986	203 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	YHR214C-E	Q8TGK0	99 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	IGO2	Q9P305	131 aa		0.98	□□□□□ -2.25
RPL40B	YKR094C	IKI3	Q06706	1349 aa	Known RBP	0.97	□□□□□ -2.25
RPL40B	YKR094C	CDC7	P06243	507 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	SIR2	P06700	562 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YLR156W	P0CE96	114 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YLR159W	P0CE97	114 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YLR161W	P0CE98	114 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	FBA1	P14540	359 aa	Known RBP	0.97	□□□□□ -2.25
RPL40B	YKR094C	TRX3	P25372	127 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	CLB6	P32943	380 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	IRC22	P40006	225 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	GLE2	P40066	365 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	PDS1	P40316	373 aa	Predicted RBP	0.97	□□□□□ -2.25
RPL40B	YKR094C	AIF1	P52923	378 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YNL010W	P53981	241 aa	Known RBP	0.97	□□□□□ -2.25
RPL40B	YKR094C	GGA1	Q06336	557 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YOL160W	Q08321	113 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YPL162C	Q12042	273 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	TSC3	Q3E790	80 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YCL012C	Q8J0M4	134 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	YPL229W	Q99395	206 aa		0.97	□□□□□ -2.25
RPL40B	YKR094C	MRS1	P07266	363 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	APA2	P22108	325 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	TAH1	P25638	111 aa	Predicted RBP	0.96	□□□□□ -2.26
RPL40B	YKR094C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.96	□□□□□ -2.26	not detected
RPL40B	YKR094C	ASF2	P32448	525 aa	Predicted RBP	0.96	□□□□□ -2.26
RPL40B	YKR094C	VPS51	P36116	164 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	MED6	P38782	295 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	EGD2	P38879	174 aa	Known RBP	0.96	□□□□□ -2.26
RPL40B	YKR094C	VTC1	P40046	129 aa	RIP-Chip data	0.96	□□□□□ -2.26	not detected
RPL40B	YKR094C	PGD1	P40356	397 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	ERG25	P53045	309 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	COS6	P53344	381 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	COG5	P53951	403 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	NEJ1	Q06148	342 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	YOL024W	Q08172	172 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	YNG1	Q08465	219 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	EMC6	Q12431	108 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	CMC2	Q3E7A4	109 aa		0.96	□□□□□ -2.26
RPL40B	YKR094C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.96	□□□□□ -2.26
RPL40B	YKR094C	YHR139C-A	O13536	103 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	MBF1	O14467	151 aa	Known RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	TIM9	O74700	87 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	REP2	P03872	296 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	SEC4	P07560	215 aa	Known RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	SNF4	P12904	322 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	SCO1	P23833	295 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	ADE1	P27616	306 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	PEX4	P29340	183 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	TRR1	P29509	319 aa	Known RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	TCA17	P32613	152 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	SNC2	P33328	115 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	ERV15	P38312	142 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	YER034W	P40022	185 aa	Known RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	RPL33B	P41056	107 aa	Known RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	TMA22	P47089	198 aa	Predicted RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	EAF6	P47128	113 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	YJR146W	P47174	117 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	YGR050C	P53231	118 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	CAB4	P53332	305 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	SWP1	Q02795	286 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	NOC4	Q06512	552 aa	Predicted RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	YLR031W	Q07978	186 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	VPS68	Q12016	184 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	RIO1	Q12196	484 aa	Known RBP	0.95	□□□□□ -2.26
RPL40B	YKR094C	PSF1	Q12488	208 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	YPR014C	Q6B0W2	109 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	YFR032C-B	Q8TGU2	87 aa		0.95	□□□□□ -2.26
RPL40B	YKR094C	RPS24A	P0CX31	135 aa	Known RBP	0.94	□□□□□ -2.26
RPL40B	YKR094C	RPS24B	P0CX32	135 aa	Known RBP	0.94	□□□□□ -2.26
RPL40B	YKR094C	RPB3	P16370	318 aa	Known RBP	0.94	□□□□□ -2.26
RPL40B	YKR094C	GRX2	P17695	143 aa	Known RBP	0.94	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 45.1 ms