RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	YKR104W	P0CE69	306 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	SFK1	P35735	353 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	DRE2	P36152	348 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	MRPL17	P36528	281 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	YHR127W	P38833	243 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	AYR1	P40471	297 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	DFG10	P40526	253 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	UFE1	P41834	346 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	EGT2	P42835	1041 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	BIR1	P47134	954 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	FYV6	P53913	173 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	YMR099C	Q03161	297 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	GMC1	Q04399	608 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	SPG4	Q04438	115 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	GPI11	Q06636	219 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	YOL024W	Q08172	172 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	GCN3	P14741	305 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	RCN1	P36054	211 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	ARC40	P38328	384 aa	Known RBP	3.16	□□□□□ -1.9
NUP85	YJR042W	IPI1	P38803	334 aa	Predicted RBP	3.16	□□□□□ -1.9
NUP85	YJR042W	PEX17	P40155	199 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	PAN6	P40459	309 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	XBP1	P40489	647 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	HCH1	P53834	153 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	YNL184C	P53876	108 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	RHO3	Q00245	231 aa	Known RBP	3.16	□□□□□ -1.9
NUP85	YJR042W	YDR124W	Q04608	324 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	YMR320W	Q04897	101 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	CYC3	P06182	269 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	YCR099C	P25657	155 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	CAM1	P29547	415 aa	Known RBP	3.16	□□□□□ -1.9
NUP85	YJR042W	FUN26	P31381	517 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	ATS1	P31386	333 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	CSE2	P33308	149 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	FMP23	P38231	175 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	PEX22	P39718	180 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	CIN5	P40917	295 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	HST4	P53688	370 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	DYN2	Q02647	92 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	RSC9	Q03124	581 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	GOT1	Q03554	138 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	YMR010W	Q03687	405 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	DTD1	Q07648	150 aa	Known RBP	3.16	□□□□□ -1.9
NUP85	YJR042W	YLR046C	Q12253	270 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	YKL018C-A	Q3E7A7	99 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	MHF2	Q3E829	80 aa		3.16	□□□□□ -1.9
NUP85	YJR042W	AIM17	P23180	465 aa	Known RBP	3.15	□□□□□ -1.9
NUP85	YJR042W	SOL2	P37262	315 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	DOG1	P38774	246 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	FAR7	P43592	221 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	COQ5	P49017	307 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	TIM13	P53299	105 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	FMP41	P53889	259 aa	Known RBP	3.15	□□□□□ -1.9
NUP85	YJR042W	YMR181C	Q03231	154 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	MHF1	Q3E835	90 aa		3.15	□□□□□ -1.9
NUP85	YJR042W	GLT1	Q12680	2145 aa	Known RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	ERD1	P16151	362 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	INO2	P26798	304 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	ALK2	P32789	676 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	PRS3	P38689	320 aa	Known RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	RRP3	P38712	501 aa	Known RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	MTC6	P38849	526 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	IPT1	P38954	527 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	RGI1	P40043	161 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	MOB2	P43563	287 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	LCB3	P47013	409 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	VPS25	P47142	202 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	BXI1	P48558	297 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	TDA7	P53882	636 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	AIM34	Q03673	198 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	YML018C	Q03730	393 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	HNT1	Q04344	158 aa	Known RBP	3.15	□□□□□ -1.91
NUP85	YJR042W	YPR091C	Q06833	770 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	YPR053C	Q6Q5F3	151 aa		3.15	□□□□□ -1.91
NUP85	YJR042W	RPL16A	P26784	199 aa	Known RBP	3.14	□□□□□ -1.91
NUP85	YJR042W	EFM1	P38732	585 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	TVP23	P38962	199 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	OST1	P41543	476 aa	Known RBP	3.14	□□□□□ -1.91
NUP85	YJR042W	AZF1	P41696	914 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	GLC8	P41818	229 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	ALB1	P47019	175 aa	Predicted RBP	3.14	□□□□□ -1.91
NUP85	YJR042W	SOL1	P50278	321 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	IDP3	P53982	420 aa	Known RBP	3.14	□□□□□ -1.91
NUP85	YJR042W	PIR3	Q03180	325 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	YOR186W	Q08560	144 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	FDH1	Q08911	376 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	IGO2	Q9P305	131 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	YLR422W	Q06409	1932 aa		3.14	□□□□□ -1.91
NUP85	YJR042W	RPN13	O13563	156 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	HEM4	P06174	275 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	RPL42A	P0CX27	106 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	RPL42B	P0CX28	106 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	MIR1	P23641	311 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	MIX23	P38162	196 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	FCY21	P40039	528 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	YDR249C	Q03787	373 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	NEJ1	Q06148	342 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	YOL160W	Q08321	113 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	YOR376W	Q08900	122 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	UIP4	Q08926	304 aa		3.13	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 44.5 ms