RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	SSS1	P35179	80 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	UPS2	P35200	230 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	JEN1	P36035	616 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	DOA1	P36037	715 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	SKG1	P36169	355 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	PRS2	P38620	318 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	RPF1	P38805	295 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	FIS1	P40515	155 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AGX1	P43567	385 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YAR1	P46683	200 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	PMT4	P46971	762 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YJL016W	P47072	561 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	HSH155	P49955	971 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	ERV14	P53173	138 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	JAC1	P53193	184 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	COG7	P53195	279 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	CDC14	Q00684	551 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YPL113C	Q02961	396 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YMR099C	Q03161	297 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	MAK3	Q03503	176 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YMR010W	Q03687	405 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YLR173W	Q06247	608 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	PRP11	Q07350	266 aa	Predicted RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	YPR202W	Q08993	238 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	BTS1	Q12051	335 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	FMP16	Q12497	93 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	TFB5	Q3E7C1	72 aa	Predicted RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	SRN2	Q99176	213 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	RIB3	Q99258	208 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	FSH3	Q99369	266 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	CDC33	P07260	213 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	MRP1	P10662	321 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	ERD1	P16151	362 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	FUN14	P18411	198 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	EPT1	P22140	391 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AHC2	P25649	128 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	PPA2	P28239	310 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	TCA17	P32613	152 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	DAD2	P36162	133 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	HMT1	P38074	348 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AVT6	P40074	448 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	RFC4	P40339	323 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	BMT5	P40493	336 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AVT7	P40501	490 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	HOC1	P47124	396 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	EAF6	P47128	113 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AIM25	P47140	327 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YGL114W	P53134	725 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	SYF2	P53277	215 aa	Predicted RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	YGR168C	P53293	376 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YNR064C	P53750	290 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	HHT1	P61830	136 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YDR366C	P87287	132 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YDR248C	Q03786	193 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	TAF9	Q05027	157 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	COA4	Q05809	96 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	DCR2	Q05924	578 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	LIP2	Q06005	328 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	CTS2	Q06350	511 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	CUR1	Q06469	252 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	MRX9	Q07349	420 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	YLR012C	Q07927	99 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	WIP1	Q2V2P8	89 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	SLO1	Q3E784	85 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	MHF2	Q3E829	80 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	HAP2	P06774	265 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	ADK1	P07170	222 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	ADH3	P07246	375 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	TOM40	P23644	387 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	CNB1	P25296	175 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	ADE1	P27616	306 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	EHD3	P28817	500 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
SMC1	YFL008W	PPQ1	P32945	549 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YUH1	P35127	236 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	CSG2	P35206	410 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YKL162C	P36052	402 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	DRE2	P36152	348 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	MRPL11	P36521	249 aa	Predicted RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	ECM8	P38246	354 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	SSH1	P38353	490 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	PRS3	P38689	320 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	ARN2	P38724	620 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	EFM1	P38732	585 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	TRR2	P38816	342 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	RPB11	P38902	120 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	IPT1	P38954	527 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	ALP1	P38971	573 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	GDI1	P39958	451 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	RFC2	P40348	353 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YNL320W	P42840	284 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YFR045W	P43617	309 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YFR057W	P43625	151 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AIP1	P46680	615 aa	Known RBP	0.85	□□□□□ -2.27
SMC1	YFL008W	YHC3	P47040	408 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	IRC18	P47056	224 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	DIE2	P50076	525 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	AIF1	P52923	378 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	TPN1	P53099	579 aa		0.85	□□□□□ -2.27
SMC1	YFL008W	YGR039W	P53225	103 aa		0.85	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 55.2 ms