RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SGSM1Q2NKQ1 1148 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 FAM47CQ5HY64 1035 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 MAP3K21Q5TCX8 1036 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 PALB2Q86YC2 1186 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 MMGT1Q8N4V1 131 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 SPATA4Q8NEY3 305 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 TRIM11Q96F44 468 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 MINDY3Q9H8M7 445 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 PRDM10Q9NQV6 1147 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 CTTNBP2NLQ9P2B4 639 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 GINS2Q9Y248 185 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 NRCAMQ92823 1304 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 MYH10P35580 1976 aa18.04■□□□□ 0.48
LDLR-206ENST00000557958 B4GALT5O43286 388 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 KPNA6O60684 536 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 ASGR1P07306 291 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 WDR93Q6P2C0 686 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 TRIM72Q6ZMU5 477 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 DNAAF5Q86Y56 855 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 HNRNPLLQ8WVV9 542 aaKnown RBP18.03■□□□□ 0.48
LDLR-206ENST00000557958 ADPGKQ9BRR6 497 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 MTMR12Q9C0I1 747 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 UPF3AQ9H1J1 476 aaKnown RBP18.03■□□□□ 0.48
LDLR-206ENST00000557958 EPC1Q9H2F5 836 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 KCNK3O14649 394 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 ADAMTS4O75173 837 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 CSDE1O75534 798 aaKnown RBP18.03■□□□□ 0.48
LDLR-206ENST00000557958 ASS1P00966 412 aaKnown RBP18.03■□□□□ 0.48
LDLR-206ENST00000557958 YWHAEP62258 255 aaKnown RBP18.03■□□□□ 0.48
LDLR-206ENST00000557958 TFAMQ00059 246 aaKnown RBP18.03■□□□□ 0.48
LDLR-206ENST00000557958 C11orf63Q6NUN7 778 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 GTF3C4Q9UKN8 822 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 PCDHB4Q9Y5E5 795 aa18.03■□□□□ 0.48
LDLR-206ENST00000557958 CASP8AP2Q9UKL3 1982 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 C17orf102A2RUQ5 167 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 HAS3O00219 553 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 BUB1BO60566 1050 aaPredicted RBP18.02■□□□□ 0.48
LDLR-206ENST00000557958 CYP2C9P11712 490 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 DNA2P51530 1060 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 HIC1Q14526 733 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 PCBP1Q15365 356 aaKnown RBP eCLIP18.02■□□□□ 0.48
LDLR-206ENST00000557958 CLUL1Q15846 466 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 NBPF20Q3BBV1 942 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 MAP9Q49MG5 647 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 CC2D1AQ6P1N0 951 aaPredicted RBP18.02■□□□□ 0.48
LDLR-206ENST00000557958 RNF180Q86T96 592 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 NT5DC3Q86UY8 548 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 DDX1Q92499 740 aaKnown RBP18.02■□□□□ 0.48
LDLR-206ENST00000557958 PCDHB18PQ96TA0 734 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 OSGEPQ9NPF4 335 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 UVRAGQ9P2Y5 699 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 PACSIN2Q9UNF0 486 aaPredicted RBP18.02■□□□□ 0.48
LDLR-206ENST00000557958 PTPN22Q9Y2R2 807 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 CEP350Q5VT06 3117 aa18.02■□□□□ 0.48
LDLR-206ENST00000557958 TREHO43280 583 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 MYBL1P10243 752 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 C2orf54Q08AI8 447 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 CLEC16AQ2KHT3 1053 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 GLE1Q53GS7 698 aaKnown RBP18.01■□□□□ 0.47
LDLR-206ENST00000557958 EEF1DP3Q658K8 133 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 SPOPLQ6IQ16 392 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 ACAD10Q6JQN1 1059 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 KIAA0319LQ8IZA0 1049 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 DNAJC5GQ8N7S2 189 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 ARHGEF26Q96DR7 871 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 FAM84AQ96KN4 292 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 NIF3L1Q9GZT8 377 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 APOBEC3GQ9HC16 384 aaKnown RBP18.01■□□□□ 0.47
LDLR-206ENST00000557958 CNTN6Q9UQ52 1028 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 SPDYE4A6NLX3 237 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 MTA2O94776 668 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 ACO1P21399 889 aaKnown RBP18.01■□□□□ 0.47
LDLR-206ENST00000557958 OSTNP61366 133 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 GABPB1Q06547 395 aaPredicted RBP18.01■□□□□ 0.47
LDLR-206ENST00000557958 AMHR2Q16671 573 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 TMEM270Q6UE05 265 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 RUFY4Q6ZNE9 571 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 ZNF653Q96CK0 615 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 HES6Q96HZ4 224 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 FAXDC2Q96IV6 333 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 PNKPQ96T60 521 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 PDZD7Q9H5P4 517 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 ASB7Q9H672 318 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 NUB1Q9Y5A7 615 aa18.01■□□□□ 0.47
LDLR-206ENST00000557958 MIF4GDA9UHW6 222 aaKnown RBP18■□□□□ 0.47
LDLR-206ENST00000557958 CYP1A2P05177 515 aa18■□□□□ 0.47
LDLR-206ENST00000557958 IQCF3P0C7M6 154 aa18■□□□□ 0.47
LDLR-206ENST00000557958 STAG3L1P0CL83 205 aa18■□□□□ 0.47
LDLR-206ENST00000557958 GNA15P30679 374 aa18■□□□□ 0.47
LDLR-206ENST00000557958 ZNF699Q32M78 642 aa18■□□□□ 0.47
LDLR-206ENST00000557958 PCSK9Q8NBP7 692 aaKnown RBP18■□□□□ 0.47
LDLR-206ENST00000557958 RBBP8NLQ8NC74 664 aaPredicted RBP18■□□□□ 0.47
LDLR-206ENST00000557958 ACTRT1Q8TDG2 376 aa18■□□□□ 0.47
LDLR-206ENST00000557958 DNAJB3Q8WWF6 145 aa18■□□□□ 0.47
LDLR-206ENST00000557958 GCOM2Q9BZD3 368 aaPredicted RBP18■□□□□ 0.47
LDLR-206ENST00000557958 ABCB6Q9NP58 842 aa18■□□□□ 0.47
LDLR-206ENST00000557958 ACP6Q9NPH0 428 aa18■□□□□ 0.47
LDLR-206ENST00000557958 STXBP5LQ9Y2K9 1186 aa18■□□□□ 0.47
LDLR-206ENST00000557958 SMIM35A0A1B0GVV1 85 aa17.99■□□□□ 0.47
LDLR-206ENST00000557958 PGRMC1O00264 195 aaKnown RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms