RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 VPS52Q8N1B4 723 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 SLC39A11Q8N1S5 342 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 GRIN3AQ8TCU5 1115 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 GPBAR1Q8TDU6 330 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 CASD1Q96PB1 797 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 CELF4Q9BZC1 486 aaKnown RBP6.13□□□□□ -1.43
PTPN4-210ENST00000485247 ATXN3LQ9H3M9 355 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 ATP6V0A4Q9HBG4 840 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 VAT1LQ9HCJ6 419 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 RGS18Q9NS28 235 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 C1orf112Q9NSG2 853 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 RTEL1Q9NZ71 1219 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 RAB23Q9ULC3 237 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 PCDHA1Q9Y5I3 950 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 DENND4AQ7Z401 1863 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 KAT6AQ92794 2004 aa6.13□□□□□ -1.43
PTPN4-210ENST00000485247 KANSL1LA0AUZ9 987 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 RPS6KA5O75582 802 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 WNT11O96014 354 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 PRNPP04156 253 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 ZFYP08048 801 aaPredicted RBP6.12□□□□□ -1.43
PTPN4-210ENST00000485247 SLFN14P0C7P3 912 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 RLBP1P12271 317 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 CD72P21854 359 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 CDK5R2Q13319 367 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 CSRP2Q16527 193 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 GNPTABQ3T906 1256 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 ZC3H12AQ5D1E8 599 aaKnown RBP6.12□□□□□ -1.43
PTPN4-210ENST00000485247 GPATCH4Q5T3I0 446 aaKnown RBP6.12□□□□□ -1.43
PTPN4-210ENST00000485247 FRYQ5TBA9 3013 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 LAIR1Q6GTX8 287 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 PRR23BQ6ZRT6 265 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 ABI1Q8IZP0 508 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 LRRC43Q8N309 656 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 NELL1Q92832 810 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 SHDQ96IW2 340 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 MYADMQ96S97 322 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 TMEM117Q9H0C3 514 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 ZBP1Q9H171 429 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 C12orf49Q9H741 205 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 SLC2A4RGQ9NR83 387 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 TMEM161AQ9NX61 479 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 ERAP1Q9NZ08 941 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 EPS15L1Q9UBC2 864 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 CCDC39Q9UFE4 941 aa6.12□□□□□ -1.43
PTPN4-210ENST00000485247 ZC3H7BQ9UGR2 993 aaKnown RBP6.12□□□□□ -1.43
PTPN4-210ENST00000485247 NOC2LQ9Y3T9 749 aaKnown RBP6.12□□□□□ -1.43
PTPN4-210ENST00000485247 COL4A3Q01955 1670 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 SPEGQ15772 3267 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 FLNBO75369 2602 aaKnown RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 TAF4O00268 1085 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 ORC4O43929 436 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 LRP3O75074 770 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 RAB11FIP3O75154 756 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 RPLP2P05387 115 aaKnown RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 RETP07949 1114 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 CELA3AP09093 270 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 USP17L7P0C7H9 530 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 MYBP10242 640 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 CTSAP10619 480 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 INSRRP14616 1297 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 KLRC2P26717 231 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 ALDH7A1P49419 539 aaKnown RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 GPC5P78333 572 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 MRPS9P82933 396 aaKnown RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 TSHZ3Q63HK5 1081 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 OGFOD3Q6PK18 319 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 C15orf39Q6ZRI6 1047 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 PPFIBP1Q86W92 1011 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 SMYD4Q8IYR2 804 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 RNF169Q8NCN4 708 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 TRAPPC12Q8WVT3 735 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 TMEM40Q8WWA1 233 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 STAMQ92783 540 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 TMEM169Q96HH4 297 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 MYL10Q9BUA6 226 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 RPP25Q9BUL9 199 aaKnown RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 AMNQ9BXJ7 453 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 PIDD1Q9HB75 910 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 CBX8Q9HC52 389 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 LRRC4CQ9HCJ2 640 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 WDR6Q9NNW5 1121 aaKnown RBP6.11□□□□□ -1.43
PTPN4-210ENST00000485247 TCP11L1Q9NUJ3 509 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 RNF19AQ9NV58 838 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 PPM1HQ9ULR3 514 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 ST3GAL5Q9UNP4 418 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 NUMBLQ9Y6R0 609 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 U3KQE9 123 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 DOCK5Q9H7D0 1870 aa6.11□□□□□ -1.43
PTPN4-210ENST00000485247 CNOT1A5YKK6 2376 aaKnown RBP6.1□□□□□ -1.43
PTPN4-210ENST00000485247 CLUHO75153 1309 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 KDM3AQ9Y4C1 1321 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 C2orf16Q68DN1 1984 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 LOXHD1Q8IVV2 1947 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 KRTAP9-6A0A140TA67 174 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 CCDC195A0A1B0GUA6 201 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 GSTTP1A0A1W2PQM5 241 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 RRN3P2A6NIE6 340 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 GIPC1O14908 333 aa6.1□□□□□ -1.43
PTPN4-210ENST00000485247 FOXP2O15409 715 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms