RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 TRIM49BA6NDI0 452 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 SPDYE4A6NLX3 237 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 BECN2A8MW95 431 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 PPP1R3GB7ZBB8 358 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 H7C4K7 107 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 SYN3O14994 580 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 AKAP3O75969 853 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 CSPG5O95196 566 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 KIF4AO95239 1232 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 ITGB3P05106 788 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 ADH1AP07327 375 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 CTSAP10619 480 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 POLR2BP30876 1174 aaKnown RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 GTF2H1P32780 548 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 STX17P56962 302 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 TNNC1P63316 161 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 SKIV2LQ15477 1246 aaKnown RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 NFKBIBQ15653 356 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 ZBTB6Q15916 424 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 DPCR1Q3MIW9 517 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 FAM171A1Q5VUB5 890 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 TTI2Q6NXR4 508 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 ANKS3Q6ZW76 656 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 Q7L0L9 218 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 FRMD5Q7Z6J6 570 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 PPFIBP1Q86W92 1011 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 CEP57Q86XR8 500 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 GPR65Q8IYL9 337 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 MICALL1Q8N3F8 863 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 LRRC52Q8N7C0 313 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 SPPL3Q8TCT6 385 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 PARD3BQ8TEW8 1205 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 HASPINQ8TF76 798 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 C18orf25Q96B23 403 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 CDCA3Q99618 268 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 CDX2Q99626 313 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 TTPALQ9BTX7 342 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 HERC2P3Q9BVR0 1158 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 SRRTQ9BXP5 876 aaKnown RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 OXCT2Q9BYC2 517 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 MTMR12Q9C0I1 747 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 NSUN3Q9H649 340 aaKnown RBP6.88□□□□□ -1.31
SF3B1-206ENST00000462613 TLE6Q9H808 572 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 GOLGA2P5Q9HBQ8 144 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 MTMR10Q9NXD2 777 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 TMEM63CQ9P1W3 806 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 HCSTQ9UBK5 93 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 AGAP1Q9UPQ3 857 aa6.88□□□□□ -1.31
SF3B1-206ENST00000462613 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.88□□□□□ -1.315e-8■□□□□ 9.2
SF3B1-206ENST00000462613 PLXNA3P51805 1871 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 SMTNL1A8MU46 457 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 KPNA7A9QM74 516 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 C2CD2LO14523 706 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 GRM6O15303 877 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 HUS1O60921 280 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ARHGEF15O94989 841 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 CXCL14O95715 111 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 LINC00271P0C7V0 271 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 CD44P16070 742 aaKnown RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 POU3F3P20264 500 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 CDK11BP21127 795 aaKnown RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 BMP6P22004 513 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ATICP31939 592 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 PIK3CAP42336 1068 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 MTIF2P46199 727 aaKnown RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 CASP4P49662 377 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 MXI1P50539 228 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 MYL5Q02045 173 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 YWHAHQ04917 246 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 TYRO3Q06418 890 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 SOX4Q06945 474 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 NAB2Q15742 525 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 PSMD5Q16401 504 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 SGSM1Q2NKQ1 1148 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ZNF699Q32M78 642 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ZNF667Q5HYK9 610 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 WDR44Q5JSH3 913 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 PLPP4Q5VZY2 271 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 C9orf57Q5W0N0 161 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 KRT39Q6A163 491 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ZNF280DQ6N043 979 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 TRAPPC11Q7Z392 1133 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 EFCAB13Q8IY85 973 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 THEM5Q8N1Q8 247 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 TMEM86AQ8N2M4 240 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ZSWIM2Q8NEG5 633 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ENOX1Q8TC92 643 aaKnown RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 MYLIPQ8WY64 445 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 RIN2Q8WYP3 895 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-206ENST00000462613 RABGGTAQ92696 567 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 TAF4BQ92750 862 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 EEF2KMTQ96G04 330 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 SUSD3Q96L08 255 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ZBP1Q9H171 429 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 THAP9Q9H5L6 903 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 MMRN2Q9H8L6 949 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 TMEM8AQ9HCN3 771 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 MARCH5Q9NX47 278 aa6.87□□□□□ -1.31
SF3B1-206ENST00000462613 ZNF638Q14966 1978 aaKnown RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms