RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 CCDC122Q5T0U0 273 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.61■□□□□ 0.57
CLDN4-201ENST00000340958 NYAP1Q6ZVC0 841 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 FAM71AQ8IYT1 594 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 C7orf61Q8IZ16 206 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 C1orf127Q8N9H9 656 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 BEST2Q8NFU1 509 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 TAF4BQ92750 862 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 ARID3AQ99856 593 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 TSGA10Q9BZW7 698 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 AGO3Q9H9G7 860 aaKnown RBP18.61■□□□□ 0.57
CLDN4-201ENST00000340958 NXF1Q9UBU9 619 aaKnown RBP18.61■□□□□ 0.57
CLDN4-201ENST00000340958 ITGA11Q9UKX5 1188 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 GUCA1BQ9UMX6 200 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 DERAQ9Y315 318 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 NUB1Q9Y5A7 615 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 PCDHB4Q9Y5E5 795 aa18.61■□□□□ 0.57
CLDN4-201ENST00000340958 A0A087X0T9 212 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 TUBB4AP04350 444 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 FAM228BP0C875 321 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 POLR2BP30876 1174 aaKnown RBP18.6■□□□□ 0.57
CLDN4-201ENST00000340958 PDE6CP51160 858 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 VAV2P52735 878 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 RBP5P82980 135 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 LPIN1Q14693 890 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 TRIM71Q2Q1W2 868 aaKnown RBP18.6■□□□□ 0.57
CLDN4-201ENST00000340958 FAM26DQ5JW98 314 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 GLRA4Q5JXX5 417 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 USP38Q8NB14 1042 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 NIF3L1Q9GZT8 377 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 AGAP1Q9UPQ3 857 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 A0A0U1RQJ8 604 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 XPOTO43592 962 aaKnown RBP18.6■□□□□ 0.57
CLDN4-201ENST00000340958 LCA5LO95447 670 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 ITGA4P13612 1032 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 GUCY2FP51841 1108 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 GNG11P61952 73 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 BMS1Q14692 1282 aaKnown RBP18.6■□□□□ 0.57
CLDN4-201ENST00000340958 ZNF667Q5HYK9 610 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 ATRIPQ8WXE1 791 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 AGPAT1Q99943 283 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 ERVK-5Q9HDB9 667 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 FAM105AQ9NUU6 356 aa18.6■□□□□ 0.57
CLDN4-201ENST00000340958 RBAK-RBAKDNI3L0D1 243 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 ZNF263O14978 683 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 TLR3O15455 904 aaKnown RBP18.59■□□□□ 0.57
CLDN4-201ENST00000340958 PQBP1O60828 265 aaKnown RBP18.59■□□□□ 0.57
CLDN4-201ENST00000340958 P4HA1P13674 534 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 BFSP2Q13515 415 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 WDR72Q3MJ13 1102 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 TRIM60Q495X7 471 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 C10orf76Q5T2E6 689 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 SCARA3Q6AZY7 606 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 SCARA5Q6ZMJ2 495 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 RNF169Q8NCN4 708 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 SMG8Q8ND04 991 aaKnown RBP18.59■□□□□ 0.57
CLDN4-201ENST00000340958 CAGE1Q8TC20 777 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 RNF39Q9H2S5 420 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 CNTN3Q9P232 1028 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 TFR2Q9UP52 801 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 UMODL1Q5DID0 1318 aa18.59■□□□□ 0.57
CLDN4-201ENST00000340958 CD58P19256 250 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 ATICP31939 592 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 BPIFB4P59827 614 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 YWHAEP62258 255 aaKnown RBP18.58■□□□□ 0.57
CLDN4-201ENST00000340958 MYO1EQ12965 1108 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 TAF3Q5VWG9 929 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 TMEM270Q6UE05 265 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 SYT10Q6XYQ8 523 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 SLC47A2Q86VL8 602 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 GLYCTKQ8IVS8 523 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 RPUSD2Q8IZ73 545 aaKnown RBP18.58■□□□□ 0.57
CLDN4-201ENST00000340958 HPDLQ96IR7 371 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 PDCL3Q9H2J4 239 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 RNF19AQ9NV58 838 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 PCDH10Q9P2E7 1040 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 DNAI1Q9UI46 699 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 SIX4Q9UIU6 781 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 UBQLN1Q9UMX0 589 aaKnown RBP18.58■□□□□ 0.57
CLDN4-201ENST00000340958 ATP11BQ9Y2G3 1177 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 SQORQ9Y6N5 450 aa18.58■□□□□ 0.57
CLDN4-201ENST00000340958 H0YGN5 161 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 CYP11B1P15538 503 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 NAP1L1P55209 391 aaKnown RBP18.58■□□□□ 0.56
CLDN4-201ENST00000340958 C1orf53Q5VUE5 145 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 ALKBH5Q6P6C2 394 aaKnown RBP18.58■□□□□ 0.56
CLDN4-201ENST00000340958 KIF18AQ8NI77 898 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 SLC20A1Q8WUM9 679 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 ZMAT2Q96NC0 199 aaKnown RBP18.58■□□□□ 0.56
CLDN4-201ENST00000340958 RPS6KC1Q96S38 1066 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 PUF60Q9UHX1 559 aaKnown RBP18.58■□□□□ 0.56
CLDN4-201ENST00000340958 NR2E3Q9Y5X4 410 aa18.58■□□□□ 0.56
CLDN4-201ENST00000340958 SMIM28A0A1B0GU29 152 aa18.57■□□□□ 0.56
CLDN4-201ENST00000340958 TMCO5BA8MYB1 307 aa18.57■□□□□ 0.56
CLDN4-201ENST00000340958 CDK7P50613 346 aa18.57■□□□□ 0.56
CLDN4-201ENST00000340958 RAB27AP51159 221 aa18.57■□□□□ 0.56
CLDN4-201ENST00000340958 ETF1P62495 437 aaKnown RBP18.57■□□□□ 0.56
CLDN4-201ENST00000340958 TNNC1P63316 161 aa18.57■□□□□ 0.56
CLDN4-201ENST00000340958 ALKAL1Q6UXT8 129 aa18.57■□□□□ 0.56
CLDN4-201ENST00000340958 LRRC8DQ7L1W4 858 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms