RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	FRE6	Q12473	712 aa		0.67	□□□□□ -2.3
RKR1	YMR247C	MRPL23	Q12487	163 aa	Predicted RBP	0.67	□□□□□ -2.3
RKR1	YMR247C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.67	□□□□□ -2.3
RKR1	YMR247C	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.67	□□□□□ -2.3
RKR1	YMR247C	SGA1	P08019	549 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	MATALPHA2	P0CY08	210 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	HMLALPHA2	P0CY09	210 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	DBF2	P22204	572 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	HMT1	P38074	348 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	WSC4	P38739	605 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	AVT2	P39981	480 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	IRC18	P47056	224 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	NBP1	P52919	319 aa	Predicted RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	SAY1	P53324	424 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	SWT21	P53873	357 aa	Predicted RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	YPL080C	Q02826	108 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	YMD8	Q03697	442 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	ECM18	Q04623	453 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	SFH1	Q06168	426 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	YET3	Q07451	203 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	HRT1	Q08273	121 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	DCN1	Q12395	269 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	SIR4	P11978	1358 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	SNA3	P14359	133 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	PEX4	P29340	183 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	MEI4	P29467	408 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	PMT2	P31382	759 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	YPS1	P32329	569 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	YER188W	P40103	239 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	FIS1	P40515	155 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	AGE2	P40529	298 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	FMP48	P53233	369 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	RTC4	P53850	401 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	INP1	Q03694	420 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	YMR315W	Q04869	349 aa	Known RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	FCF1	Q05498	189 aa	Predicted RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	RRP36	Q12481	300 aa	Predicted RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	BCY1	P07278	416 aa	Known RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	MET2	P08465	486 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	MRPS28	P21771	286 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	MAG1	P22134	296 aa	Known RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	YKL075C	P36083	450 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	ECM13	P38195	257 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	UMP1	P38293	148 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	FAR7	P43592	221 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	DYN3	Q04949	312 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	BOP2	Q06150	570 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	CTR3	Q06686	241 aa		0.66	□□□□□ -2.3
RKR1	YMR247C	RRP40	Q08285	240 aa	Known RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	PAA1	Q12447	191 aa	Known RBP	0.66	□□□□□ -2.3
RKR1	YMR247C	COX10	P21592	462 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	CSM1	P25651	190 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	POP8	P38208	133 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	AVT7	P40501	490 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	XPT1	P47165	209 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	NBP35	P52920	328 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	MIG2	P53035	382 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	USE1	P53146	245 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	YNR062C	P53748	327 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	YNL247W	P53852	767 aa	Known RBP	0.65	□□□□□ -2.3
RKR1	YMR247C	GRE1	Q08969	168 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	YPL162C	Q12042	273 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	POM33	Q12164	279 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	ATG5	Q12380	294 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	MHT1	Q12525	324 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	HTL1	Q9URQ5	78 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	RSF2	P46974	1380 aa		0.65	□□□□□ -2.3
RKR1	YMR247C	STE3	P06783	470 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	MEK1	P24719	497 aa	Predicted RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	POT1	P27796	417 aa	Known RBP RIP-Chip data	0.65	□□□□□ -2.31	not detected
RKR1	YMR247C	AGA2	P32781	87 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	COT1	P32798	439 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	SKG1	P36169	355 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	PRS4	P38063	326 aa	Predicted RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	IML3	P38265	245 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	0.65	□□□□□ -2.31	not detected
RKR1	YMR247C	SEN34	P39707	275 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	SNX4	P47057	423 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	FYV6	P53913	173 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	YMR114C	Q04471	368 aa	Known RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	INM2	Q05533	292 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	YPR147C	Q06522	304 aa	Known RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	NOT5	Q12514	560 aa	Predicted RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	Q0255	P03881	472 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	MSF1	P08425	469 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	RSR1	P13856	272 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	ERD2	P18414	219 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	SNF6	P18888	332 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	GPI12	P23797	304 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	CDC10	P25342	322 aa	Known RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	ATG15	P25641	520 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	BMH2	P34730	273 aa	Known RBP	0.65	□□□□□ -2.31
RKR1	YMR247C	PRY2	P36110	329 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	TVP38	P36164	337 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	TRM5	P38793	499 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	GDS1	P41913	522 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	YJR012C	P47087	207 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	AIM25	P47140	327 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	DSK2	P48510	373 aa		0.65	□□□□□ -2.31
RKR1	YMR247C	VMA10	P48836	114 aa	Known RBP	0.65	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 64 ms