RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeastyeast

Gene UBC6, Length 753 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBC6YER100W TRR1P29509 319 aaKnown RBP3.86□□□□□ -1.79
UBC6YER100W RNP1P32385 249 aa3.86□□□□□ -1.79
UBC6YER100W TRR2P38816 342 aa3.86□□□□□ -1.79
UBC6YER100W RSM25P40496 264 aa3.86□□□□□ -1.79
UBC6YER100W YFR045WP43617 309 aa3.86□□□□□ -1.79
UBC6YER100W YNL140CP53910 189 aa3.86□□□□□ -1.79
UBC6YER100W NRK1P53915 240 aa3.86□□□□□ -1.79
UBC6YER100W NOT5Q12514 560 aaPredicted RBP3.86□□□□□ -1.79
UBC6YER100W NUP157P40064 1391 aaKnown RBP3.86□□□□□ -1.79
UBC6YER100W TOM40P23644 387 aaKnown RBP3.85□□□□□ -1.79
UBC6YER100W LDB16P25587 256 aa3.85□□□□□ -1.79
UBC6YER100W RPA43P46669 326 aa3.85□□□□□ -1.79
UBC6YER100W LSM7P53905 115 aaKnown RBP3.85□□□□□ -1.79
UBC6YER100W SNO1Q03144 224 aa3.85□□□□□ -1.79
UBC6YER100W PRM15Q03262 622 aa3.85□□□□□ -1.79
UBC6YER100W GRH1Q04410 372 aaKnown RBP3.85□□□□□ -1.79
UBC6YER100W YML096WQ04489 525 aa3.85□□□□□ -1.79
UBC6YER100W SCW10Q04951 389 aa3.85□□□□□ -1.79
UBC6YER100W YOL019WQ08157 551 aa3.85□□□□□ -1.79
UBC6YER100W IES3Q12345 250 aa3.85□□□□□ -1.79
UBC6YER100W PAN1P32521 1480 aa3.85□□□□□ -1.79
UBC6YER100W UTH1P36135 365 aa3.84□□□□□ -1.79
UBC6YER100W RPF1P38805 295 aaKnown RBP3.84□□□□□ -1.79
UBC6YER100W MDM34P53083 459 aa3.84□□□□□ -1.79
UBC6YER100W JAC1P53193 184 aa3.84□□□□□ -1.79
UBC6YER100W GTR2P53290 341 aa3.84□□□□□ -1.79
UBC6YER100W YLR460CP54007 376 aa3.84□□□□□ -1.79
UBC6YER100W PET191Q02772 108 aa3.84□□□□□ -1.79
UBC6YER100W ARO80Q04052 950 aa3.84□□□□□ -1.79
UBC6YER100W GGA1Q06336 557 aa3.84□□□□□ -1.79
UBC6YER100W YLR030WQ07967 263 aa3.84□□□□□ -1.79
UBC6YER100W YOR020W-AQ3E824 90 aa3.84□□□□□ -1.79
UBC6YER100W MRS1P07266 363 aa3.83□□□□□ -1.8
UBC6YER100W ERG24P32462 438 aaKnown RBP3.83□□□□□ -1.8
UBC6YER100W COS8P38723 381 aa3.83□□□□□ -1.8
UBC6YER100W DOG2P38773 246 aa3.83□□□□□ -1.8
UBC6YER100W DOG1P38774 246 aa3.83□□□□□ -1.8
UBC6YER100W SRP14P38985 146 aa3.83□□□□□ -1.8
UBC6YER100W SSU72P53538 206 aaPredicted RBP3.83□□□□□ -1.8
UBC6YER100W NOC4Q06512 552 aaPredicted RBP3.83□□□□□ -1.8
UBC6YER100W YPL257WQ08974 193 aa3.83□□□□□ -1.8
UBC6YER100W MDM32Q12171 622 aa3.83□□□□□ -1.8
UBC6YER100W SGA1P08019 549 aa3.82□□□□□ -1.8
UBC6YER100W GCY1P14065 312 aaKnown RBP RIP-Chip data3.82□□□□□ -1.8not detected
UBC6YER100W UBC6P33296 250 aaPredicted RBP3.82□□□□□ -1.8
UBC6YER100W MAK5P38112 773 aaPredicted RBP3.82□□□□□ -1.8
UBC6YER100W MTW1P39731 289 aa3.82□□□□□ -1.8
UBC6YER100W FCF1Q05498 189 aaPredicted RBP3.82□□□□□ -1.8
UBC6YER100W YLR179CQ06252 201 aaKnown RBP3.82□□□□□ -1.8
UBC6YER100W NIP7Q08962 181 aaKnown RBP3.82□□□□□ -1.8
UBC6YER100W YDL085C-AQ3E7B7 68 aaKnown RBP3.82□□□□□ -1.8
UBC6YER100W MGT1P26188 188 aa3.81□□□□□ -1.8
UBC6YER100W PDS1P40316 373 aaPredicted RBP3.81□□□□□ -1.8
UBC6YER100W YGR050CP53231 118 aa3.81□□□□□ -1.8
UBC6YER100W HST4P53688 370 aa3.81□□□□□ -1.8
UBC6YER100W YNL010WP53981 241 aaKnown RBP3.81□□□□□ -1.8
UBC6YER100W YMD8Q03697 442 aa3.81□□□□□ -1.8
UBC6YER100W RPL25P04456 142 aaKnown RBP3.8□□□□□ -1.8
UBC6YER100W CDC7P06243 507 aa3.8□□□□□ -1.8
UBC6YER100W PUT1P09368 476 aa3.8□□□□□ -1.8
UBC6YER100W GRX2P17695 143 aaKnown RBP3.8□□□□□ -1.8
UBC6YER100W MAG1P22134 296 aaKnown RBP3.8□□□□□ -1.8
UBC6YER100W MSA2P36157 363 aa3.8□□□□□ -1.8
UBC6YER100W IRC22P40006 225 aa3.8□□□□□ -1.8
UBC6YER100W YER121WP40076 114 aa3.8□□□□□ -1.8
UBC6YER100W TMA22P47089 198 aaPredicted RBP3.8□□□□□ -1.8
UBC6YER100W YNL247WP53852 767 aaKnown RBP3.8□□□□□ -1.8
UBC6YER100W ALG9P53868 555 aaKnown RBP3.8□□□□□ -1.8
UBC6YER100W COG5P53951 403 aa3.8□□□□□ -1.8
UBC6YER100W GEP5Q12393 293 aa3.8□□□□□ -1.8
UBC6YER100W TAH1P25638 111 aaPredicted RBP3.79□□□□□ -1.8
UBC6YER100W RCN1P36054 211 aa3.79□□□□□ -1.8
UBC6YER100W UBC12P52491 188 aa3.79□□□□□ -1.8
UBC6YER100W MIG2P53035 382 aa3.79□□□□□ -1.8
UBC6YER100W RSM10Q03201 203 aa3.79□□□□□ -1.8
UBC6YER100W GRX8Q05926 109 aa3.79□□□□□ -1.8
UBC6YER100W YLR036CQ07986 203 aa3.79□□□□□ -1.8
UBC6YER100W QCR2P07257 368 aa3.78□□□□□ -1.8
UBC6YER100W DSF1P0CX08 502 aa3.78□□□□□ -1.8
UBC6YER100W YNR073CP0CX09 502 aa3.78□□□□□ -1.8
UBC6YER100W FCY2P17064 533 aa3.78□□□□□ -1.8
UBC6YER100W CLG1P35190 452 aa3.78□□□□□ -1.8
UBC6YER100W YBR063CP38083 404 aa3.78□□□□□ -1.8
UBC6YER100W AME1P38313 324 aa3.78□□□□□ -1.8
UBC6YER100W RMD6P39975 231 aa3.78□□□□□ -1.8
UBC6YER100W HMF1P40037 129 aaKnown RBP3.78□□□□□ -1.8
UBC6YER100W FIS1P40515 155 aa3.78□□□□□ -1.8
UBC6YER100W OST2P46964 130 aa3.78□□□□□ -1.8
UBC6YER100W AIM25P47140 327 aa3.78□□□□□ -1.8
UBC6YER100W FLC3P53121 802 aa3.78□□□□□ -1.8
UBC6YER100W YNL184CP53876 108 aa3.78□□□□□ -1.8
UBC6YER100W LPP1Q04396 274 aa3.78□□□□□ -1.8
UBC6YER100W YMR315WQ04869 349 aaKnown RBP3.78□□□□□ -1.8
UBC6YER100W YOL024WQ08172 172 aa3.78□□□□□ -1.8
UBC6YER100W YLR050CQ12155 161 aaKnown RBP3.78□□□□□ -1.8
UBC6YER100W YPR063CQ12160 140 aa3.78□□□□□ -1.8
UBC6YER100W HIS3P06633 220 aa3.77□□□□□ -1.81
UBC6YER100W ADH3P07246 375 aaKnown RBP3.77□□□□□ -1.81
UBC6YER100W CNB1P25296 175 aa3.77□□□□□ -1.81
UBC6YER100W MID2P36027 376 aa3.77□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms