RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	RAX2	Q12465	1220 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	MHF2	Q3E829	80 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	YCL021W-A	Q96VH3	125 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	SIR2	P06700	562 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	APA2	P22108	325 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	KRE9	P39005	276 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	STB1	P42845	420 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	PMT5	P52867	743 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	SPR6	Q01684	191 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	STD1	Q02794	444 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	UTP15	Q04305	513 aa	Known RBP	3.42	□□□□□ -1.86
UBC8	YEL012W	PRP11	Q07350	266 aa	Predicted RBP	3.42	□□□□□ -1.86
UBC8	YEL012W	YDL114W	Q07530	308 aa		3.42	□□□□□ -1.86
UBC8	YEL012W	CPR1	P14832	162 aa	Known RBP	3.41	□□□□□ -1.86
UBC8	YEL012W	DAD2	P36162	133 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	SKG1	P36169	355 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	NAT2	P37293	288 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	GEP7	P53171	287 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	YMR181C	Q03231	154 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	VPS71	Q03433	280 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	YFH1	Q07540	174 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	IRC25	Q07951	179 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	SYC1	Q08553	188 aa	Predicted RBP	3.41	□□□□□ -1.86
UBC8	YEL012W	PPT2	Q12036	173 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	YLR126C	Q12288	251 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	APC2	Q12440	853 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	YER078W-A	Q3E7A2	54 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	YGR035W-A	Q45U48	73 aa		3.41	□□□□□ -1.86
UBC8	YEL012W	CMK2	P22517	447 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	ATP7	P30902	174 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	DEG1	P31115	442 aa	Known RBP	3.4	□□□□□ -1.87
UBC8	YEL012W	MCH2	P36032	473 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	RIB5	P38145	238 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	GPI18	P38211	433 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	LOH1	P47055	219 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	GET1	P53192	235 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	PEX12	Q04370	399 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	YMR105W-A	Q8TGS8	64 aa		3.4	□□□□□ -1.87
UBC8	YEL012W	MSW1	P04803	379 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	RPL12A	P0CX53	165 aa	Known RBP	3.39	□□□□□ -1.87
UBC8	YEL012W	RPL12B	P0CX54	165 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	SNF6	P18888	332 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	IES6	P32617	166 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	YBR096W	P38256	230 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	WSS1	P38838	269 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	RMD6	P39975	231 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	YER079W	P40052	210 aa	Known RBP	3.39	□□□□□ -1.87
UBC8	YEL012W	MAM33	P40513	266 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	TIR3	P40552	269 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	SFH5	P47008	294 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	YGR168C	P53293	376 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	YDC1	Q02896	317 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	YMR166C	Q03829	368 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	NNT1	Q05874	261 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	SNX3	Q08826	162 aa	Known RBP	3.39	□□□□□ -1.87
UBC8	YEL012W	SIA1	Q12212	622 aa		3.39	□□□□□ -1.87
UBC8	YEL012W	DPM1	P14020	267 aa	Known RBP	3.38	□□□□□ -1.87
UBC8	YEL012W	YAK1	P14680	807 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	MEK1	P24719	497 aa	Predicted RBP	3.38	□□□□□ -1.87
UBC8	YEL012W	DOA4	P32571	926 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	TOA2	P32774	122 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	SUR1	P33300	382 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	YOX1	P34161	385 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	PRY2	P36110	329 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.38	□□□□□ -1.87	not detected
UBC8	YEL012W	RPS20	P38701	121 aa	Known RBP	3.38	□□□□□ -1.87
UBC8	YEL012W	GON7	P46984	123 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	YJL016W	P47072	561 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	YGL101W	P53144	215 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	PXR1	P53335	271 aa	Predicted RBP	3.38	□□□□□ -1.87
UBC8	YEL012W	PGA1	P53896	198 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	AIM36	Q03798	255 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	GRX3	Q03835	250 aa		3.38	□□□□□ -1.87
UBC8	YEL012W	TPT1	Q12272	230 aa	Known RBP	3.38	□□□□□ -1.87
UBC8	YEL012W	TFB5	Q3E7C1	72 aa	Predicted RBP	3.38	□□□□□ -1.87
UBC8	YEL012W	KIN28	P06242	306 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	MRPS28	P21771	286 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	MIG1	P27705	504 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	YBR241C	P38142	488 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	FIG1	P38224	298 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	PEX32	P38292	413 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	GDT1	P38301	280 aa	Predicted RBP	3.37	□□□□□ -1.87
UBC8	YEL012W	YER184C	P39961	794 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	JLP2	P40206	208 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	CIN2	P46670	268 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	MDE1	P47095	244 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	PRM8	P53174	237 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	GPI17	Q04080	534 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	ELP6	Q04868	273 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	BCP1	Q06338	283 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	ERV2	Q12284	196 aa		3.37	□□□□□ -1.87
UBC8	YEL012W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	3.36	□□□□□ -1.87	not detected
UBC8	YEL012W	CYC3	P06182	269 aa		3.36	□□□□□ -1.87
UBC8	YEL012W	RPL5	P26321	297 aa	Known RBP	3.36	□□□□□ -1.87
UBC8	YEL012W	ASF2	P32448	525 aa	Predicted RBP	3.36	□□□□□ -1.87
UBC8	YEL012W	DPH5	P32469	300 aa	Predicted RBP	3.36	□□□□□ -1.87
UBC8	YEL012W	SRP102	P36057	244 aa	Predicted RBP	3.36	□□□□□ -1.87
UBC8	YEL012W	PDX3	P38075	228 aa	Known RBP	3.36	□□□□□ -1.87
UBC8	YEL012W	SBE22	P38814	852 aa		3.36	□□□□□ -1.87
UBC8	YEL012W	CHL4	P38907	458 aa		3.36	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms