RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 HNRNPDLO14979 420 aaKnown RBP20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 N4BP1O75113 896 aaKnown RBP20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 TBCAO75347 108 aaKnown RBP20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 LAMP2P13473 410 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 TXLNAP40222 546 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 BRCC3P46736 316 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 RESTQ13127 1097 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 AXDND1Q5T1B0 1012 aaPredicted RBP20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 KRI1Q8N9T8 703 aaKnown RBP20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 LRRC15Q8TF66 581 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 CDY1Q9Y6F8 540 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 WDFY4Q6ZS81 3184 aa20.8■□□□□ 0.92
CCDC28A-203ENST00000617445 TTC26A0AVF1 554 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 K7ELQ4 463 aaPredicted RBP20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 K7ENM7 598 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 ADAM12O43184 909 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 XPOTO43592 962 aaKnown RBP20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 CYP3A5P20815 502 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 FSHRP23945 695 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 GTF2BQ00403 316 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 VARS2Q5ST30 1063 aaKnown RBP20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 IER5LQ5T953 404 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 SLC8B1Q6J4K2 584 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 APPL2Q8NEU8 664 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 ZNF461Q8TAF7 563 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 C18orf25Q96B23 403 aaPredicted RBP20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 SUSD3Q96L08 255 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 MYADMQ96S97 322 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 ST6GALNAC4Q9H4F1 302 aa20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 FBXO2Q9UK22 296 aaPredicted RBP20.79■□□□□ 0.92
CCDC28A-203ENST00000617445 OGTO15294 1046 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 MEFVO15553 781 aaPredicted RBP20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 CXCL8P10145 99 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 IGFBP6P24592 240 aaPredicted RBP20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 CLCN5P51795 746 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 PPP2R3AQ06190 1150 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 MRPL58Q14197 206 aaKnown RBP20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 CD302Q8IX05 232 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 SLC7A14Q8TBB6 771 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 EPSTI1Q96J88 318 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 MFSD1Q9H3U5 465 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 SMOC2Q9H3U7 446 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 ZHX3Q9H4I2 956 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 MAFFQ9ULX9 164 aa20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 UBQLN1Q9UMX0 589 aaKnown RBP20.78■□□□□ 0.92
CCDC28A-203ENST00000617445 A0A0B4J269 797 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 I3L4J1 428 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 ABLIM3O94929 683 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 PDGFBP01127 241 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 ADRB2P07550 413 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 PDIA4P13667 645 aaKnown RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 MARCKSP29966 332 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 LRPAP1P30533 357 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 VCPP55072 806 aaKnown RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 ZBTB6Q15916 424 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 SEZ6Q53EL9 994 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 RRAGBQ5VZM2 374 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 ASTLQ6HA08 431 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 RSPO2Q6UXX9 243 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 GET4Q7L5D6 327 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 GRASPQ7Z6J2 395 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 MAP4K3Q8IVH8 894 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 SLC44A3Q8N4M1 653 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 PRSS33Q8NF86 280 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 OXCT2Q9BYC2 517 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 HAPLN2Q9GZV7 340 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 RPF1Q9H9Y2 349 aaKnown RBP20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 SEL1LQ9UBV2 794 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 WNT16Q9UBV4 365 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 KCNH3Q9ULD8 1083 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 MTMR6Q9Y217 621 aa20.77■□□□□ 0.92
CCDC28A-203ENST00000617445 ANHXE9PGG2 379 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 STX6O43752 255 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 TBC1D4O60343 1298 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 PAX3P23760 479 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 ELF1P32519 619 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 MCM4P33991 863 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 POU5F1Q01860 360 aaKnown RBP20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 SLC39A14Q15043 492 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 TPGS2Q68CL5 300 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 SLFN12LQ6IEE8 588 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 KIF12Q96FN5 646 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 FIZ1Q96SL8 496 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 FBXL21Q9UKT6 434 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 CDH7Q9ULB5 785 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 PCDHB8Q9UN66 801 aa20.76■□□□□ 0.91
CCDC28A-203ENST00000617445 ARHGEF37A1IGU5 675 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 CCL16O15467 120 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 FAM189A1O60320 539 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 ATF2P15336 505 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 ROR1Q01973 937 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 ZNF280DQ6N043 979 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 CCDC73Q6ZRK6 1079 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 USP49Q70CQ1 688 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 SV2BQ7L1I2 683 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 HVCN1Q96D96 273 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 MSTO1Q9BUK6 570 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 POLIQ9UNA4 740 aa20.75■□□□□ 0.91
CCDC28A-203ENST00000617445 LACTBL1A8MY62 500 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 M0QZQ0 153 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms