RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PABPC1LQ4VXU2 614 aaKnown RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 ARL6IP4Q66PJ3 421 aaKnown RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 ST13P5Q8NFI4 369 aaPredicted RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 ZNF461Q8TAF7 563 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 KCNN1Q92952 543 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 TMX3Q96JJ7 454 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 ZBTB45Q96K62 511 aaPredicted RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 AVENQ9NQS1 362 aaPredicted RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 HCFC1R1Q9NWW0 138 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 KCND2Q9NZV8 630 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 DLGAP2Q9P1A6 1054 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 POLIQ9UNA4 740 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 NOTCH4Q99466 2003 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 SMTNP53814 917 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 STARD6P59095 220 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 GPC5P78333 572 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 ROR1Q01973 937 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 TMEM119Q4V9L6 283 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 VARS2Q5ST30 1063 aaKnown RBP18.73■□□□□ 0.59
CLN3-216ENST00000565316 ZPBP2Q6X784 338 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 NPAS3Q8IXF0 933 aa18.73■□□□□ 0.59
CLN3-216ENST00000565316 NKD2Q969F2 451 aaPredicted RBP18.73■□□□□ 0.59
CLN3-216ENST00000565316 C18orf25Q96B23 403 aaPredicted RBP18.73■□□□□ 0.59
CLN3-216ENST00000565316 PLA2G4BP0C869 781 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 RFX1P22670 979 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 MCL1Q07820 350 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 RAD51AP2Q09MP3 1159 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 STRN3Q13033 797 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 NOLC1Q14978 699 aaKnown RBP eCLIP18.72■□□□□ 0.59
CLN3-216ENST00000565316 ZRSR1Q15695 479 aaKnown RBP18.72■□□□□ 0.59
CLN3-216ENST00000565316 SLC10A6Q3KNW5 377 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 ARSHQ5FYA8 562 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 TCEAL8Q8IYN2 117 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 SUSD3Q96L08 255 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 SIT1Q9Y3P8 196 aa18.72■□□□□ 0.59
CLN3-216ENST00000565316 WDR27A2RRH5 827 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 VWA3AA6NCI4 1184 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 H7C4K7 107 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 SLC26A4O43511 780 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 ATF2P15336 505 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 GJB2P29033 226 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 SHDQ96IW2 340 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 DDX23Q9BUQ8 820 aaKnown RBP18.71■□□□□ 0.59
CLN3-216ENST00000565316 GDE1Q9NZC3 331 aa18.71■□□□□ 0.59
CLN3-216ENST00000565316 CD2BP2O95400 341 aaKnown RBP18.7■□□□□ 0.58
CLN3-216ENST00000565316 RHOP08100 348 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 HARSP12081 509 aaKnown RBP18.7■□□□□ 0.58
CLN3-216ENST00000565316 SLC5A9Q2M3M2 681 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 TPGS2Q68CL5 300 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 POTEHQ6S545 545 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 PJA1Q8NG27 643 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 AK8Q96MA6 479 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 PLIN2Q99541 437 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 HAPLN2Q9GZV7 340 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 PLEKHA5Q9HAU0 1116 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 ANKFY1Q9P2R3 1169 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 FBXL5Q9UKA1 691 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 MAFFQ9ULX9 164 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 MRPS23Q9Y3D9 190 aaKnown RBP18.7■□□□□ 0.58
CLN3-216ENST00000565316 NUB1Q9Y5A7 615 aa18.7■□□□□ 0.58
CLN3-216ENST00000565316 EP300Q09472 2414 aaPredicted RBP18.69■□□□□ 0.58
CLN3-216ENST00000565316 NPHP3-ACAD11A0A0J9YXS1 232 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 H0YCG3 227 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 H3BQV1 296 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 CLDN3O15551 220 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 DCNP07585 359 aaKnown RBP18.69■□□□□ 0.58
CLN3-216ENST00000565316 CLTAP09496 248 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 GLULP15104 373 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 PTPN2P17706 415 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 NCKAP1LP55160 1127 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 SEZ6Q53EL9 994 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 CDK5RAP3Q96JB5 506 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 TBC1D32Q96NH3 1257 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 KXD1Q9BQD3 176 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 FOXQ1Q9C009 403 aa18.69■□□□□ 0.58
CLN3-216ENST00000565316 LARSQ9P2J5 1176 aaKnown RBP18.69■□□□□ 0.58
CLN3-216ENST00000565316 TTC26A0AVF1 554 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 ECI2O75521 394 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 MICAL2O94851 1124 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 SEC24AO95486 1093 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 LRG1P02750 347 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 SCP2P22307 547 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 ELF1P32519 619 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 PFKPQ01813 784 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 PRKCQQ04759 706 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 SNW1Q13573 536 aaKnown RBP18.68■□□□□ 0.58
CLN3-216ENST00000565316 ZBTB6Q15916 424 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 SLC44A4Q53GD3 710 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 PRSS36Q5K4E3 855 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 APPL2Q8NEU8 664 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 LRRC15Q8TF66 581 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 ING5Q8WYH8 240 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 SEMA4AQ9H3S1 761 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 TUBGCP4Q9UGJ1 667 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 ODF2LQ9ULJ1 636 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 PCDHB8Q9UN66 801 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.68■□□□□ 0.58
CLN3-216ENST00000565316 FRYLO94915 3013 aa18.68■□□□□ 0.58
CLN3-216ENST00000565316 MYH15Q9Y2K3 1946 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 CITO14578 2027 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms