RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 C7orf25Q9BPX7 421 aa5.42□□□□□ -1.54
HMGB3P13-201ENST00000511263 SENP6Q9GZR1 1112 aaPredicted RBP5.42□□□□□ -1.54
HMGB3P13-201ENST00000511263 ZNF277Q9NRM2 450 aaPredicted RBP5.42□□□□□ -1.54
HMGB3P13-201ENST00000511263 RRP7BPQ9NSQ0 103 aa5.42□□□□□ -1.54
HMGB3P13-201ENST00000511263 ING1Q9UK53 422 aaPredicted RBP5.42□□□□□ -1.54
HMGB3P13-201ENST00000511263 DHX29Q7Z478 1369 aaKnown RBP5.42□□□□□ -1.54
HMGB3P13-201ENST00000511263 ABCC5O15440 1437 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SCAPERQ9BY12 1400 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MAGI2Q86UL8 1455 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 TEX14Q8IWB6 1497 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MBD5Q9P267 1494 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 DIRC3C9JPN6 131 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 PJA2O43164 708 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 FZD7O75084 574 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 IPO7O95373 1038 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SNRPA1P09661 255 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 OSMP13725 252 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 GSPT1P15170 499 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 ADSLP30566 484 aaPredicted RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 PTPN7P35236 360 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MCAMP43121 646 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CDKN1CP49918 316 aaPredicted RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CCT2P78371 535 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SARNPP82979 210 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MXRA7P84157 204 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 EXOSC10Q01780 885 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CCDC173Q0VFZ6 552 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MGAT2Q10469 447 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SP140Q13342 867 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MTMR1Q13613 665 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 R3HDM1Q15032 1099 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 NOMO1Q15155 1222 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CRB2Q5IJ48 1285 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 RRP12Q5JTH9 1297 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 LRCH2Q5VUJ6 765 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 ICE2Q659A1 982 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 ABHD15Q6UXT9 468 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 RNF207Q6ZRF8 634 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 TMPRSS6Q8IU80 811 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CMIPQ8IY22 773 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 RPUSD2Q8IZ73 545 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 PDCL2Q8N4E4 241 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 MB21D1Q8N884 522 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SNRNP27Q8WVK2 155 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SLC13A1Q9BZW2 595 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 REXO4Q9GZR2 422 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 ENKD1Q9H0I2 346 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CSRNP2Q9H175 543 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 PCED1AQ9H1Q7 454 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 ZNF703Q9H7S9 590 aaPredicted RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 UPF2Q9HAU5 1272 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 DNM3Q9UQ16 869 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 RIPOR2Q9Y4F9 1068 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 PAXBP1Q9Y5B6 917 aa5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 CDK13Q14004 1512 aaKnown RBP5.41□□□□□ -1.54
HMGB3P13-201ENST00000511263 SUPT6HQ7KZ85 1726 aaKnown RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 CCDC196A0A1B0GTZ2 297 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 KATNA1O75449 491 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 EIF3JO75822 258 aaKnown RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 SNUPNO95149 360 aaKnown RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 KLF10Q13118 480 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 CDC37Q16543 378 aaPredicted RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 FAM47AQ5JRC9 791 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 SPDYAQ5MJ70 313 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 WDR78Q5VTH9 848 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 NAIF1Q69YI7 327 aaPredicted RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 EFCAB12Q6NXP0 572 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 DRICH1Q6PGQ1 229 aaPredicted RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 CCDC91Q7Z6B0 441 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 ELOA2Q8IYF1 753 aaPredicted RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 PQLC1Q8N2U9 271 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 CASKIN2Q8WXE0 1202 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 HDAC10Q969S8 669 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 FUBP3Q96I24 572 aaKnown RBP eCLIP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 DCLRE1CQ96SD1 692 aaKnown RBP5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 MNTQ99583 582 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 PRDM12Q9H4Q4 367 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 SLITRK6Q9H5Y7 841 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 SCOCQ9UIL1 159 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 PCDHGA2Q9Y5H1 932 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 HS3ST3A1Q9Y663 406 aa5.4□□□□□ -1.54
HMGB3P13-201ENST00000511263 PCF11O94913 1555 aaKnown RBP5.4□□□□□ -1.55
HMGB3P13-201ENST00000511263 RIMBP3CA6NJZ7 1639 aa5.4□□□□□ -1.55
HMGB3P13-201ENST00000511263 RIMBP3BA6NNM3 1639 aa5.4□□□□□ -1.55
HMGB3P13-201ENST00000511263 RIMBP3Q9UFD9 1639 aa5.4□□□□□ -1.55
HMGB3P13-201ENST00000511263 HFM1A2PYH4 1435 aa5.4□□□□□ -1.55
HMGB3P13-201ENST00000511263 FANCAO15360 1455 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 CCP110O43303 1012 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 DTNBO60941 627 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 MT-CO1P00395 513 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 TPM3P06753 285 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 SPATA31D3P0C874 917 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 XRCC6P12956 609 aaKnown RBP eCLIP5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 WASP42768 502 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 RECQLP46063 649 aaPredicted RBP5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 RRP1BQ14684 758 aaKnown RBP5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 PTPN21Q16825 1174 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 INAVAQ3KP66 663 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 HSP90B2PQ58FF3 399 aa5.39□□□□□ -1.55
HMGB3P13-201ENST00000511263 SPATA31D4Q6ZUB0 917 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms