RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 NACADO15069 1562 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 TNKSO95271 1327 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 HTRA2O43464 458 aaPredicted RBP4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 RPLP2P05387 115 aaKnown RBP4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 EDNRBP24530 442 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 DDX6P26196 483 aaKnown RBP eCLIP4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 BLOC1S1P78537 153 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 CDC42EP1Q00587 391 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 CREMQ03060 361 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 FAM50AQ14320 339 aaKnown RBP4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 ABCB5Q2M3G0 1257 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 SPDYE7PQ495Y7 208 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 ABHD17BQ5VST6 288 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 EFCAB2Q5VUJ9 269 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 FITM2Q8N6M3 262 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 NUP133Q8WUM0 1156 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 FUBP1Q96AE4 644 aaKnown RBP4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 MTMR8Q96EF0 704 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 TEKT5Q96M29 485 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 COQ10AQ96MF6 247 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 WDR11Q9BZH6 1224 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 TOR3AQ9H497 397 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 RNPEPQ9H4A4 650 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 GSTO2Q9H4Y5 243 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 CYP4F11Q9HBI6 524 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 TDP1Q9NUW8 608 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 FBXO34Q9NWN3 711 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 ANKFY1Q9P2R3 1169 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 PCDHA13Q9Y5I0 950 aa4.79□□□□□ -1.64
HMGB3P23-201ENST00000414981 A0A1B0GTW7 788 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 XPOTO43592 962 aaKnown RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 LPXNO60711 386 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 FOSP01100 380 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 ELANEP08246 267 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 IBSPP21815 317 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 TGM1P22735 817 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 CCND1P24385 295 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 USP14P54578 494 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 ADKP55263 362 aaKnown RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 PTPROQ16827 1216 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 B3GNTL1Q67FW5 361 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 PNMA8AQ86V59 439 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 IL17RDQ8NFM7 739 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 AGAP2Q99490 1192 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 ADAM2Q99965 735 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 C11orf54Q9H0W9 315 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 SYBUQ9NX95 663 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 CALCOCO1Q9P1Z2 691 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 LIMCH1Q9UPQ0 1083 aa4.78□□□□□ -1.64
HMGB3P23-201ENST00000414981 TCRBV7S2A1N4TA0A589 114 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 GRID2IPA4D2P6 1211 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 MYADML2A6NDP7 307 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 PRSS23O95084 383 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 EGR2P11161 476 aaPredicted RBP4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 MTHFD1P11586 935 aaKnown RBP4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 PROZP22891 400 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 SLC6A2P23975 617 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 AVPR1BP47901 424 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 TARDBPQ13148 414 aaKnown RBP eCLIP4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 RAB39AQ14964 217 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 SMN1Q16637 294 aaKnown RBP4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 PTPN21Q16825 1174 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 FOXR2Q6PJQ5 311 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 UBE3BQ7Z3V4 1068 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 RSPH3Q86UC2 560 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 LCORLQ8N3X6 602 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 IFI44Q8TCB0 444 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 LINC00476Q8WZB0 136 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 MRGPRX4Q96LA9 322 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 MED15Q96RN5 788 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 DMRTA2Q96SC8 542 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 PNKPQ96T60 521 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 ASPSCR1Q9BZE9 553 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 HOMER2Q9NSB8 354 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 RNF181Q9P0P0 153 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 C11orf21Q9P2W6 132 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 MAP3K2Q9Y2U5 619 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 NOP58Q9Y2X3 529 aaKnown RBP4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 PCDHB1Q9Y5F3 818 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 NOX1Q9Y5S8 564 aa4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 CFAP20Q9Y6A4 193 aaKnown RBP4.77□□□□□ -1.65
HMGB3P23-201ENST00000414981 LOC102724159A0A0B4J2E5 919 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 A0A0U1RQG5 324 aaPredicted RBP4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 CCDC154A6NI56 674 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 CDKL5O76039 1030 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 SPDEFO95238 335 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 GPANK1O95872 356 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 HKR1P10072 659 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 RECQLP46063 649 aaPredicted RBP4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 INHBEP58166 350 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 KIF23Q02241 960 aaPredicted RBP4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 COL10A1Q03692 680 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 EIF4G1Q04637 1599 aaKnown RBP4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 OCA2Q04671 838 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 ODF1Q14990 250 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 PWP2Q15269 919 aaKnown RBP4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 PABPC1LQ4VXU2 614 aaKnown RBP4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 TTC7BQ86TV6 843 aa4.76□□□□□ -1.65
HMGB3P23-201ENST00000414981 DCBLD1Q8N8Z6 715 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms