RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CLSTN1O94985 981 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 MYCNP04198 464 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 INHAP05111 366 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 ZSCAN20P17040 1043 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 GRK4P32298 578 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 GRM5P41594 1212 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 MRPS6P82932 125 aaKnown RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 PTK2Q05397 1052 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 SNX17Q15036 470 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 ENOX2Q16206 610 aaKnown RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 SEZ6Q53EL9 994 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 RPAINQ86UA6 219 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 DHX38Q92620 1227 aaKnown RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 TAF4BQ92750 862 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 ALS2CR12Q96Q35 445 aa19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 PUF60Q9UHX1 559 aaKnown RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 AJAP1Q9UKB5 411 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-203ENST00000389856 YARSP54577 528 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 BPIFB4P59827 614 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 CAP1Q01518 475 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 NCOA4Q13772 614 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 ARRDC4Q8NCT1 418 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 SHC3Q92529 594 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 TSPAN18Q96SJ8 248 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 CELF4Q9BZC1 486 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 TRIM6Q9C030 488 aaPredicted RBP19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 PLEKHA5Q9HAU0 1116 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 TRPV2Q9Y5S1 764 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 MROH7Q68CQ1 1323 aa19.55■□□□□ 0.72
CCDC88C-203ENST00000389856 FOXN3O00409 490 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 LRRN2O75325 713 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 CSDE1O75534 798 aaKnown RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 OSTNP61366 133 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 TFAMQ00059 246 aaKnown RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 CYP27A1Q02318 531 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 ITIH3Q06033 890 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 GFPT1Q06210 699 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 SGSM1Q2NKQ1 1148 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 LMBRD2Q68DH5 695 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 CCSAPQ6IQ19 270 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 SERINC5Q86VE9 423 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 FAM71AQ8IYT1 594 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 HELQQ8TDG4 1101 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 FAXDC2Q96IV6 333 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 SEZ6LQ9BYH1 1024 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 GPR88Q9GZN0 384 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 LACRTQ9GZZ8 138 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 ANKZF1Q9H8Y5 726 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 TRIM10Q9UDY6 481 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 ADAMTS1Q9UHI8 967 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 TSKSQ9UJT2 592 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 DERAQ9Y315 318 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 TRIP12Q14669 1992 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 CXCL8P10145 99 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 TNFAIP3P21580 790 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 USP8P40818 1118 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 YWHAEP62258 255 aaKnown RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 ZNF200P98182 395 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 HIC1Q14526 733 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 NAB2Q15742 525 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 WDR93Q6P2C0 686 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 ZNF571Q7Z3V5 609 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 CDR2LQ86X02 465 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 OR5B17Q8NGF7 314 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 RUBCNQ92622 972 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 GLT1D1Q96MS3 346 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 INTUQ9ULD6 942 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 NOD1Q9Y239 953 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 C2CD2Q9Y426 696 aa19.54■□□□□ 0.72
CCDC88C-203ENST00000389856 PTPRJQ12913 1337 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 TARSL2A2RTX5 802 aaKnown RBP19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 RCCD1A6NED2 376 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 ZNF263O14978 683 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 NPTXRO95502 500 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 NOP14P78316 857 aaKnown RBP19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 DMTNQ08495 405 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 GDF6Q6KF10 455 aaPredicted RBP19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 MTMR12Q9C0I1 747 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 PIN4Q9Y237 131 aaKnown RBP19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 ANK1P16157 1881 aa19.53■□□□□ 0.72
CCDC88C-203ENST00000389856 A0A087X0T9 212 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 VNN1O95497 513 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 ATP1A1P05023 1023 aaKnown RBP19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 FAM228BP0C875 321 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 PDE6CP51160 858 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 ACLYP53396 1101 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 WNT7BP56706 349 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 CUL2Q13617 745 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 IFI16Q16666 785 aaKnown RBP19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 ZNF572Q7Z3I7 529 aaPredicted RBP19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 HACE1Q8IYU2 909 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 KREMEN1Q96MU8 473 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 AGPAT1Q99943 283 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 TRIM17Q9Y577 477 aa19.52■□□□□ 0.72
CCDC88C-203ENST00000389856 RALGAPA2Q2PPJ7 1873 aa19.52■□□□□ 0.71
CCDC88C-203ENST00000389856 LACTBL1A8MY62 500 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 CAND2O75155 1236 aa19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 ASS1P00966 412 aaKnown RBP19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 TCP1P17987 556 aaKnown RBP19.51■□□□□ 0.71
CCDC88C-203ENST00000389856 HOXA11P31270 313 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms