RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 IGHDP01880 384 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 APOA4P06727 396 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 NOS2P35228 1153 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 VPS41P49754 854 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 FAM160A1Q05DH4 1040 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 PSMD5Q16401 504 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TYW1BQ6NUM6 668 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 KLC3Q6P597 504 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 CATSPERGQ6ZRH7 1159 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 IGSF22Q8N9C0 903 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 MLKLQ8NB16 471 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 DPP3Q9NY33 737 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 NKIRAS1Q9NYS0 192 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 GCNT4Q9P109 453 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TLK1Q9UKI8 766 aa9.75□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D12O60347 775 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 JAK2O60674 1132 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 LGR5O75473 907 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 MTA2O94776 668 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 MYO1DO94832 1006 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 PFKMP08237 780 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 SMIM10L2AP0DMW4 78 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 SMIM10L2BP0DMW5 78 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 TGFB3P10600 412 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 ATP5DP30049 168 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 SERPINB6P35237 376 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 HADHAP40939 763 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 SIX5Q8N196 739 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 ECT2Q9H8V3 914 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 KLHL11Q9NVR0 708 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 STAP2Q9UGK3 403 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 SFMBT1Q9UHJ3 866 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 HPS5Q9UPZ3 1129 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 POTEMA6NI47 508 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 KIAA0391O15091 583 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 CASP6P55212 293 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 ERVK-21P61565 698 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 STILQ15468 1287 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 TCEA2Q15560 299 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 CCDC6Q16204 474 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 LONRF2Q1L5Z9 754 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 TRIM60Q495X7 471 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 FBXL19Q6PCT2 694 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 NUSAP1Q9BXS6 441 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 ZFP14Q9HCL3 533 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 FAM49BQ9NUQ9 324 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 NRCAMQ92823 1304 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 COL5A2P05997 1499 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 SYT1P21579 422 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 CD52P31358 61 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 MESDQ14696 234 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 IMPG1Q17R60 797 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 FAM102AQ5T9C2 384 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 ARMCX6Q7L4S7 300 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 TXNRD3Q86VQ6 643 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 MCRS1Q96EZ8 462 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 FAM107BQ9H098 131 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 GIMAP4Q9NUV9 329 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 GRXCR2A6NFK2 248 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 HMGB1P1B2RPK0 211 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 NRIP1P48552 1158 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 CDH8P55286 799 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 PSMC1P62191 440 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 FOXD4Q12950 439 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 CXorf40AQ8TE69 158 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 FDXACB1Q9BRP7 624 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 CATSPERBQ9H7T0 1116 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 PXMP2Q9NR77 195 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 KCNH7Q9NS40 1196 aa9.74□□□□□ -0.85
LIMCH1-202ENST00000381753 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 CHEK2O96017 543 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 RHOCP08134 193 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 DARSP14868 501 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 LHX1P48742 406 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 ACOT2P49753 483 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 ATPAF2Q8N5M1 289 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 SYTL5Q8TDW5 730 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 UBLCP1Q8WVY7 318 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 SCLYQ96I15 445 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 SAMD11Q96NU1 681 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 FOXP1Q9H334 677 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 DHX35Q9H5Z1 703 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 COPS7BQ9H9Q2 264 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 PHF20L1A8MW92 1017 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 AKR1B15C9JRZ8 316 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 IFRD1O00458 451 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TSPAN3O60637 253 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 NOL3O60936 208 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 NCAM1P13591 858 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 FOXO4P98177 505 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 USP39Q53GS9 565 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 ZNF746Q6NUN9 644 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 SFR1Q86XK3 245 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 ATP11CQ8NB49 1132 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 MCOLN3Q8TDD5 553 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 USP13Q92995 863 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 PHF20Q9BVI0 1012 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms