RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YMR316C-AI2HB70 103 aa1.06□□□□□ -2.24
VPS54YDR027C YAL064W-BO13512 126 aa1.06□□□□□ -2.24
VPS54YDR027C PRE7P23724 241 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C RSA4P25382 515 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C YCR016WP25617 290 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C TPS2P31688 896 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C VPH2P32341 215 aa1.06□□□□□ -2.24
VPS54YDR027C HEK2P38199 381 aaKnown RBP RIP-Chip data1.06□□□□□ -2.24not detected
VPS54YDR027C POP8P38208 133 aa1.06□□□□□ -2.24
VPS54YDR027C LDB7P38210 180 aa1.06□□□□□ -2.24
VPS54YDR027C YBR096WP38256 230 aa1.06□□□□□ -2.24
VPS54YDR027C FMC1P40491 155 aa1.06□□□□□ -2.24
VPS54YDR027C DSN1P40568 576 aa1.06□□□□□ -2.24
VPS54YDR027C YFL012WP43580 148 aa1.06□□□□□ -2.24
VPS54YDR027C JHD2P47156 728 aaPredicted RBP1.06□□□□□ -2.24
VPS54YDR027C NBP35P52920 328 aa1.06□□□□□ -2.24
VPS54YDR027C GIM3P53900 129 aa1.06□□□□□ -2.24
VPS54YDR027C DIA1P54005 336 aa1.06□□□□□ -2.24
VPS54YDR027C YMR166CQ03829 368 aa1.06□□□□□ -2.24
VPS54YDR027C YML096WQ04489 525 aa1.06□□□□□ -2.24
VPS54YDR027C YDL144CQ07589 356 aa1.06□□□□□ -2.24
VPS54YDR027C PAM18Q07914 168 aa1.06□□□□□ -2.24
VPS54YDR027C RLP24Q07915 199 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C PER33Q12144 273 aa1.06□□□□□ -2.24
VPS54YDR027C TDH2P00358 332 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C FUS3P16892 353 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C KRE6P32486 720 aa1.06□□□□□ -2.24
VPS54YDR027C YHL049CP38722 271 aa1.06□□□□□ -2.24
VPS54YDR027C TCD1P38756 429 aa1.06□□□□□ -2.24
VPS54YDR027C ASP1P38986 381 aaPredicted RBP1.06□□□□□ -2.24
VPS54YDR027C MIC19P43594 170 aa1.06□□□□□ -2.24
VPS54YDR027C UFD1P53044 361 aa1.06□□□□□ -2.24
VPS54YDR027C YGR067CP53243 804 aa1.06□□□□□ -2.24
VPS54YDR027C YNL095CP53932 642 aa1.06□□□□□ -2.24
VPS54YDR027C SMD1Q02260 146 aaPredicted RBP1.06□□□□□ -2.24
VPS54YDR027C YDR209CQ03480 137 aa1.06□□□□□ -2.24
VPS54YDR027C ARC18Q05933 178 aaKnown RBP1.06□□□□□ -2.24
VPS54YDR027C PLB3Q08108 686 aa1.06□□□□□ -2.24
VPS54YDR027C YPL119C-AQ3E751 87 aa1.06□□□□□ -2.24
VPS54YDR027C RPS5P26783 225 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C ALK2P32789 676 aaPredicted RBP1.05□□□□□ -2.24
VPS54YDR027C CAT2P32796 670 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C MRX3P38172 270 aa1.05□□□□□ -2.24
VPS54YDR027C ARN2P38724 620 aa1.05□□□□□ -2.24
VPS54YDR027C AVT6P40074 448 aa1.05□□□□□ -2.24
VPS54YDR027C COG7P53195 279 aa1.05□□□□□ -2.24
VPS54YDR027C SWT21P53873 357 aaPredicted RBP1.05□□□□□ -2.24
VPS54YDR027C OSH6Q02201 448 aa1.05□□□□□ -2.24
VPS54YDR027C YPL039WQ03080 316 aa1.05□□□□□ -2.24
VPS54YDR027C YDR222WQ04925 415 aa1.05□□□□□ -2.24
VPS54YDR027C MRX8Q05473 314 aa1.05□□□□□ -2.24
VPS54YDR027C SNF8Q12483 233 aa1.05□□□□□ -2.24
VPS54YDR027C RHO1P06780 209 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C PHO80P20052 293 aa1.05□□□□□ -2.24
VPS54YDR027C RPO26P20435 155 aa1.05□□□□□ -2.24
VPS54YDR027C RNA15P25299 296 aaPredicted RBP1.05□□□□□ -2.24
VPS54YDR027C CAM1P29547 415 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C HOM6P31116 359 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C BMH2P34730 273 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C JEN1P36035 616 aa1.05□□□□□ -2.24
VPS54YDR027C YER085CP40058 173 aa1.05□□□□□ -2.24
VPS54YDR027C YIL054WP40524 105 aa1.05□□□□□ -2.24
VPS54YDR027C ERG10P41338 398 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C RPL10P41805 221 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C YRB1P41920 201 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C HOC1P47124 396 aa1.05□□□□□ -2.24
VPS54YDR027C HSH155P49955 971 aaKnown RBP1.05□□□□□ -2.24
VPS54YDR027C ZRG17P53735 605 aa1.05□□□□□ -2.24
VPS54YDR027C NOP13P53883 403 aaKnown RBP RIP-Chip data1.05□□□□□ -2.24not detected
VPS54YDR027C ASI3P53983 676 aa1.05□□□□□ -2.24
VPS54YDR027C GIS3Q12418 502 aa1.05□□□□□ -2.24
VPS54YDR027C COS2P0CX12 379 aa1.04□□□□□ -2.24
VPS54YDR027C COS3P0CX13 379 aa1.04□□□□□ -2.24
VPS54YDR027C ZIP1P31111 875 aa1.04□□□□□ -2.24
VPS54YDR027C PHO89P38361 574 aa1.04□□□□□ -2.24
VPS54YDR027C SYS1P41544 203 aa1.04□□□□□ -2.24
VPS54YDR027C COS4P43542 379 aa1.04□□□□□ -2.24
VPS54YDR027C USE1P53146 245 aa1.04□□□□□ -2.24
VPS54YDR027C PEX10Q05568 337 aa1.04□□□□□ -2.24
VPS54YDR027C RUD3Q12234 484 aaKnown RBP1.04□□□□□ -2.24
VPS54YDR027C ATG5Q12380 294 aa1.04□□□□□ -2.24
VPS54YDR027C CUP2P15315 225 aa1.04□□□□□ -2.24
VPS54YDR027C CPT1P17898 393 aa1.04□□□□□ -2.24
VPS54YDR027C NTG1P31378 399 aa1.04□□□□□ -2.24
VPS54YDR027C ERG2P32352 222 aa1.04□□□□□ -2.24
VPS54YDR027C YHL044WP38727 235 aa1.04□□□□□ -2.24
VPS54YDR027C GOS1P38736 223 aa1.04□□□□□ -2.24
VPS54YDR027C OTU1P43558 301 aa1.04□□□□□ -2.24
VPS54YDR027C YJR079WP47126 109 aa1.04□□□□□ -2.24
VPS54YDR027C YGL034CP53186 121 aa1.04□□□□□ -2.24
VPS54YDR027C MRPL50P53724 139 aa1.04□□□□□ -2.24
VPS54YDR027C YLR283WQ05867 314 aa1.04□□□□□ -2.24
VPS54YDR027C NNT1Q05874 261 aa1.04□□□□□ -2.24
VPS54YDR027C CLP1Q08685 445 aaPredicted RBP1.04□□□□□ -2.24
VPS54YDR027C CSM4Q08955 156 aa1.04□□□□□ -2.24
VPS54YDR027C YPL264CQ08980 353 aa1.04□□□□□ -2.24
VPS54YDR027C CKA2P19454 339 aa1.03□□□□□ -2.24
VPS54YDR027C TRR2P38816 342 aa1.03□□□□□ -2.24
VPS54YDR027C BFR1P38934 470 aaKnown RBP RIP-Chip data1.03□□□□□ -2.24not detected
VPS54YDR027C MSS2P40990 351 aa1.03□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 34.9 ms