RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	VBA2	P38358	474 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	RRP4	P38792	359 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	NIF3	P53081	288 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	PKR1	Q03880	122 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	SDH7	Q04401	133 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	YML096W	Q04489	525 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	YLR049C	Q12110	428 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	UBR1	P19812	1950 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	PEP4	P07267	405 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	SPS4	P09937	338 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	RPL27A	P0C2H6	136 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	RPL27B	P0C2H7	136 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	COX13	P32799	129 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	YKL097C	P34245	136 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	ARN2	P38724	620 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	FLC3	P53121	802 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	NQM1	P53228	333 aa	Predicted RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	IDP3	P53982	420 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	CUE4	Q04201	117 aa	Predicted RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	TRM12	Q04235	462 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	HSP31	Q04432	237 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	ASA1	Q06822	443 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	SRL2	Q12020	392 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	PET20	Q99373	253 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	BAR1	P12630	587 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	SNF6	P18888	332 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	PHO80	P20052	293 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	EXG1	P23776	448 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	LHP1	P33399	275 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	MIC12	P38341	106 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	GEP4	P38812	185 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	PRP39	P39682	629 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	YIL012W	P40551	113 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	GLR1	P41921	483 aa	Known RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	YFL015C	P43578	164 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	TIS11	P47977	285 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	AVT4	P50944	713 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	YNR066C	P53752	436 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	YMR034C	Q05131	434 aa	Predicted RBP	4.05	□□□□□ -1.76
CDC48	YDL126C	YOL073C	Q08232	322 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	PER33	Q12144	273 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	SLO1	Q3E784	85 aa		4.05	□□□□□ -1.76
CDC48	YDL126C	SAL1	D6W196	494 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	AHC2	P25649	128 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	YKL187C	P34231	750 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	FRE2	P36033	711 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	APL3	P38065	1025 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	DBP8	P38719	431 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	TIM17	P39515	158 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	YFR020W	P43600	232 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	VEL1	P53058	206 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	FRE4	P53746	719 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	MRPL6	P32904	214 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	PCL5	P38794	229 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	CHL4	P38907	458 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	MBB1	P39534	108 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	GAT2	P40209	560 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	PMT6	P42934	759 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	YJR149W	P47177	404 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	SNN1	P48232	102 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	EMC4	P53073	190 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	RSM10	Q03201	203 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	TRS23	Q03784	219 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	PAL1	Q05518	499 aa	Known RBP	4.04	□□□□□ -1.76
CDC48	YDL126C	FDH1	Q08911	376 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	SLF1	Q12034	447 aa	Known RBP	4.04	□□□□□ -1.76
CDC48	YDL126C	MRX4	Q12467	430 aa		4.04	□□□□□ -1.76
CDC48	YDL126C	YAR066W	P0CX18	203 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YHR214W	P0CX19	203 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	CTS1	P29029	562 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	SNC1	P31109	117 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YEF1	P32622	495 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YKL075C	P36083	450 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	PDX3	P38075	228 aa	Known RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	VRG4	P40107	337 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YNL194C	P40169	301 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	GLC8	P41818	229 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YGR168C	P53293	376 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YML053C	Q04978	212 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	MHF1	Q3E835	90 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	SUC2	P00724	532 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	RPL12A	P0CX53	165 aa	Known RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	RPL12B	P0CX54	165 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	NHP6B	P11633	99 aa	Known RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	MIR1	P23641	311 aa	Known RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	RNQ1	P25367	405 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	SUA7	P29055	345 aa	Predicted RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	SOR1	P35497	357 aa	Known RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	MRPL49	P40858	161 aa	Predicted RBP	4.03	□□□□□ -1.76
CDC48	YDL126C	PRM10	P42946	383 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	NUP57	P48837	541 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YNL033W	P53964	284 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YNL019C	P53975	284 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	PIN3	Q06449	215 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	SOR2	Q07786	357 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	JLP1	Q12358	412 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YDL199C	Q12407	687 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	YPL119C-A	Q3E751	87 aa		4.03	□□□□□ -1.76
CDC48	YDL126C	GRX2	P17695	143 aa	Known RBP	4.02	□□□□□ -1.77
CDC48	YDL126C	PPA2	P28239	310 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms