RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TPRNQ4KMQ1 711 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 LLGL2Q6P1M3 1020 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 CCDC65Q8IXS2 484 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 ZSWIM2Q8NEG5 633 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 CDCA3Q99618 268 aaPredicted RBP21.96■■□□□ 1.11
SS18-218ENST00000581021 CHST7Q9NS84 486 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 PDCD11Q14690 1871 aaKnown RBP21.96■■□□□ 1.11
SS18-218ENST00000581021 TTC26A0AVF1 554 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 C2CD2LO14523 706 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 OGTO15294 1046 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 NR1I2O75469 434 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 PRPF6O94906 941 aaKnown RBP21.95■■□□□ 1.1
SS18-218ENST00000581021 CNPP09543 421 aaKnown RBP21.95■■□□□ 1.1
SS18-218ENST00000581021 SLFN14P0C7P3 912 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 CA8P35219 290 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 UPP1Q16831 310 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 KIAA0319Q5VV43 1072 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 PTCRAQ6ISU1 281 aaPredicted RBP21.95■■□□□ 1.1
SS18-218ENST00000581021 PAGE5Q96GU1 130 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 TUBGCP4Q9UGJ1 667 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 CPSF3Q9UKF6 684 aaKnown RBP21.95■■□□□ 1.1
SS18-218ENST00000581021 HCFC2Q9Y5Z7 792 aa21.95■■□□□ 1.1
SS18-218ENST00000581021 A0A1W2PQ27 194 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 A0A1W2PQ64 194 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 A0A1W2PQD8 194 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 GRXCR2A6NFK2 248 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 ABCD1P33897 745 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 DSG1Q02413 1049 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 RTP2Q5QGT7 225 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 TMEM184AQ6ZMB5 413 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 EPM2AIP1Q7L775 607 aaPredicted RBP21.94■■□□□ 1.1
SS18-218ENST00000581021 FSIP1Q8NA03 581 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 FEZF2Q8TBJ5 459 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 ACCSQ96QU6 501 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 LRRC27Q9C0I9 530 aa21.94■■□□□ 1.1
SS18-218ENST00000581021 BDP1A6H8Y1 2624 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 LACTBL1A8MY62 500 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 KLRC4O43908 158 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 TADA2AO75478 443 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 URODP06132 367 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 ADRB2P07550 413 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 EPCAMP16422 314 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 GLUD2P49448 558 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 ACOT2P49753 483 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 AMPD3Q01432 767 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 CRELD2Q6UXH1 353 aaPredicted RBP21.93■■□□□ 1.1
SS18-218ENST00000581021 UNC13DQ70J99 1090 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 SMRP1Q8NCR6 262 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 SLC22A17Q8WUG5 538 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 KLHL5Q96PQ7 755 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 CD207Q9UJ71 328 aa21.93■■□□□ 1.1
SS18-218ENST00000581021 SF3B1O75533 1304 aaKnown RBP eCLIP21.92■■□□□ 1.12e-6■■■■■ 90.5
SS18-218ENST00000581021 TMEM189-UBE2V1I3L0A0 370 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 I3L4J1 428 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 GUCY2FP51841 1108 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 WNT7BP56706 349 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 ZBTB6Q15916 424 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 FAM26FQ5R3K3 315 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 SYCE2Q6PIF2 218 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 PYM1Q9BRP8 204 aaKnown RBP21.92■■□□□ 1.1
SS18-218ENST00000581021 CBWD1Q9BRT8 395 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 PLEKHA5Q9HAU0 1116 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 MRPL17Q9NRX2 175 aaKnown RBP21.92■■□□□ 1.1
SS18-218ENST00000581021 STK39Q9UEW8 545 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 CDH22Q9UJ99 828 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 AGO2Q9UKV8 859 aaKnown RBP21.92■■□□□ 1.1
SS18-218ENST00000581021 PCDHB13Q9Y5F0 798 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 VWA8A3KMH1 1905 aa21.92■■□□□ 1.1
SS18-218ENST00000581021 NCOR1O75376 2440 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 DLL1O00548 723 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 PODXLO00592 558 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 TEX28O15482 410 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 MBTPS2O43462 519 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 B3GAT3O94766 335 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 PRR29P0C7W0 189 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 SYKP43405 635 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 SMAD4Q13485 552 aaKnown RBP21.91■■□□□ 1.1
SS18-218ENST00000581021 ALCAMQ13740 583 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 ANKRD54Q6NXT1 300 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 PRSS55Q6UWB4 352 aaPredicted RBP21.91■■□□□ 1.1
SS18-218ENST00000581021 CEP57L1Q8IYX8 460 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 UROC1Q96N76 676 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 UHRF1Q96T88 793 aaPredicted RBP21.91■■□□□ 1.1
SS18-218ENST00000581021 RXFP1Q9HBX9 757 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 SLC38A7Q9NVC3 462 aa21.91■■□□□ 1.1
SS18-218ENST00000581021 ANK1P16157 1881 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 NFICP08651 508 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 RPL17P18621 184 aaKnown RBP21.9■■□□□ 1.1
SS18-218ENST00000581021 BRCC3P46736 316 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 CLCN4P51793 760 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 PPP2R3AQ06190 1150 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 USP41Q3LFD5 358 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 FAM171A1Q5VUB5 890 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 SLFN12LQ6IEE8 588 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 KANK3Q6NY19 840 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 DCLRE1AQ6PJP8 1040 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 SCFD1Q8WVM8 642 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 RIN2Q8WYP3 895 aaPredicted RBP21.9■■□□□ 1.1
SS18-218ENST00000581021 POMGNT1Q8WZA1 660 aa21.9■■□□□ 1.1
SS18-218ENST00000581021 SAAL1Q96ER3 474 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms